Thomas Naughton

Prof Thomas Naughton

Computer Science, Hamilton Institute

Location Eolas Building

Floor 1st

Room 107

Phone (01) 708 4599

Email tomn@cs.nuim.ie

Personal Webpage http://www.cs.nuim.ie/~tnaughton

Biography

Research Interests

optical information processing, optical computing, digital holography, computer theory, image compression, distributed computing

Book Chapters

	Year	Publication
	2015	'Optical Computing' T.J. Naughton and D. Woods (2015) 'Optical Computing' In: Robert A. Meyers (eds). Encyclopedia of Complexity and Systems Science. Berlin: Springer Berlin Heidelberg. [DOI] [Details]
	2012	'Heterotic computing examples with optics, bacteria, and chemicals' Stepney S.;Abramsky S.;Bechmann M.;Gorecki J.;Kendon V.;Naughton T.;Perez-Jimenez M.;Romero-Campero F.;Sebald A. (2012) 'Heterotic computing examples with optics, bacteria, and chemicals' In: Durand-Lose, J.;Jonoska, N (eds). Unconventional Computation and Natural Computation (LNCS 7445). Berlin: Springer. [DOI] [Details]
	2010	'Presentation and Perception of Digital Hologram Reconstructions of Real-World Objects on Conventional Stereoscopic Displays' Nasanen, R;Lehtimaki, TM;Pitkaaho, T;Naughton, TJ (2010) 'Presentation and Perception of Digital Hologram Reconstructions of Real-World Objects on Conventional Stereoscopic Displays' In: INFORMATION OPTICS AND PHOTONICS: ALGORITHMS, SYSTEMS, AND APPLICATIONS. NEW YORK: SPRINGER. [DOI] [Details]
	2009	'Extraction of three-dimensional information from reconstructions of in-line digital holograms' McElhinney C.P.;Hennelly B.M.;Javidi B.;Naughton T.J. (2009) 'Extraction of three-dimensional information from reconstructions of in-line digital holograms' In: Javidi, B; Okano, F; Son, J-Y (eds). Three-dimensional Imaging, Visualization, and Display. New York: Springer. [DOI] [Details]
	2009	'Optical computing' Woods, D. and T.J. Naughton (2009) 'Optical computing' In: Encyclopedia of Complexity and System Science. Springer-Verlag. [full-text] [Details]
	2006	'Measurement of compression defects in phase-shifting digital holographic data' E. Darakis, T.J. Naughton, J.J. Soraghan, and B. Javidi (2006) 'Measurement of compression defects in phase-shifting digital holographic data' In: Optical Information Systems IV, Proceedings of SPIE vol. 6311. Bellingham: SPIE Press. [Details]
	2006	'Implementations of a model of physical sorting From Utopian to Genuine Unconventional Computers' N. Murphy, T.J. Naughton, D. Woods, B. Henley, K. McDermott, E. Duffy, P.J.M. van der Burgt, and N. Woods (2006) 'Implementations of a model of physical sorting From Utopian to Genuine Unconventional Computers' In: 5th International Conference on Unconventional Computation. Frome, UK: Luniver Press. [full-text] [Details]
	2006	'A numerical analysis of double random phase encryption' D.S. Monaghan, U. Gopinathan, T.J. Naughton, and J.T. Sheridan (2006) 'A numerical analysis of double random phase encryption' In: Optical Information Systems IV, Proceedings of SPIE vol. 6311. Bellingham: SPIE Press. [full-text] [Details]
	2006	'Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects' A.E. Shortt, T.J. Naughton, and B. Javidi (2006) 'Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects' In: Three-Dimensional TV, Video, and Display V, Proceedings of SPIE vol. 6392. Bellingham: SPIE Press. [Details]
	2006	'Iterative and noniterative nonuniform quantisation techniques in digital holography' A.E. Shortt, T.J. Naughton, and B. Javidi (2006) 'Iterative and noniterative nonuniform quantisation techniques in digital holography' In: Photon Management II, Proceedings of SPIE vol. 6187. Bellingham: SPIE Press. [Details]
	2006	'Compression of encrypted digital holograms using artificial neural networks' A.E. Shortt, T.J. Naughton, and B. Javidi (2006) 'Compression of encrypted digital holograms using artificial neural networks' In: Optical Imaging, Photonics Sensors, and Systems for Homeland Security. New York: Springer-Verlag. [full-text] [Details]
	2006	'Digital inline holography of biological specimens' J.P. Ryle, U. Gopinathan, S. McDonnell, T.J. Naughton, and J.T. Sheridan (2006) 'Digital inline holography of biological specimens' In: Optical Information Systems IV, Proceedings of SPIE vol. 6311. Bellingham: SPIE Press. [Details]
	2006	'Numerical analysis of systematic errors in an optical encryption system' D. Monaghan, U. Gopinathan, D. Kelly, T.J. Naughton, and J. Sheridan (2006) 'Numerical analysis of systematic errors in an optical encryption system' In: Photon Management II, Proceedings of SPIE vol. 6187. Bellingham: SPIE Press. [full-text] [Details]
	2005	'Strengths and weaknesses of optical encryption algorithms' Gopinathan, U., D. S. Monaghan, T. J. Naughton, J. T. Sheridan and B. Javidi ' (2005) 'Strengths and weaknesses of optical encryption algorithms' In: 18th Annual Meeting of the IEEE Lasers and Electro-Optics Society. New York: IEE Press. [full-text] [Details]
	2005	'Compression of encrypted three-dimensional objects using digital holography' Naughton, T. J. and B. Javidi (2005) 'Compression of encrypted three-dimensional objects using digital holography' In: Photon Management Research in Ireland, Proceedings of SPIE vol. 5830. Bellingham: SPIE Press. [Details]
	2005	'Optimal quantization applied to digital holographic data' Shortt, A. E., T. J. Naughton and B. Javidi (2005) 'Optimal quantization applied to digital holographic data' In: Photon Management Research in Ireland, Proceedings of SPIE vol. 5829. Bellingham: SPIE Press. [Details]
	2005	'Vector quantization compression of digital holograms of three-dimensional objects' Shortt, A. E., T. J. Naughton and B. Javidi (2005) 'Vector quantization compression of digital holograms of three-dimensional objects' In: Photon Management Research in Ireland, Proceedings of SPIE vol. 5828. Bellingham: SPIE Press. [Details]
	2005	'Applications of spatial light modulators in optical signal processing systems' Monaghan, D. S., U. Gopinathan, B. M. Hennelly, D. P. Kelly, T. J. Naughton and J. T. Sheridan (2005) 'Applications of spatial light modulators in optical signal processing systems' In: Photon Management Research in Ireland, Proceedings of SPIE vol. 5827. Bellingham: SPIE Press. [full-text] [Details]
	2005	'Dynamic task scheduling using genetic algorithms for heterogeneous distributed computing' Page, A. J. and T. J. Naughton (2005) 'Dynamic task scheduling using genetic algorithms for heterogeneous distributed computing' In: 19th IEEE International Parallel and Distributed Processing Symposium. New York: IEE Press. [full-text] [Details]
	2005	'Bioinformatics on a heterogeneous Java distributed system' Page, A. J., T. M. Keane and T. J. Naughton (2005) 'Bioinformatics on a heterogeneous Java distributed system' In: 19th IEEE International Parallel and Distributed Processing Symposium. New York: IEE Press. [full-text] [Details]
	2005	'An optical encryption scheme that uses polarization of coherent light' Gopinathan, U., D. S. Monaghan, T. J. Naughton and J. T. Sheridan (2005) 'An optical encryption scheme that uses polarization of coherent light' In: OSA Frontiers in Optics/Laser Science Conference. Washington: OSA Press. [Details]
	2005	'Capture, encryption, compression, and display of digital holograms of three-dimensional objects' Gopinathan, U., D. S. Monaghan, A. E. Shortt, T. J. Naughton, J. T. Sheridan and B. Javidi (2005) 'Capture, encryption, compression, and display of digital holograms of three-dimensional objects' In: Optical Recording and Processing of Information, Holography 2005 - International Conference on Holography. Bellingham: SPIE Press. [full-text] [Details]
	2005	'Security analysis of optical encryption' Frauel, Y., A. Castro, T. J. Naughton and B. Javidi (2005) 'Security analysis of optical encryption' In: Unmanned/Unattended Sensors and Sensor Networks II, Proceedings of SPIE vol. 5986. Bellingham: SPIE Press. [full-text] [Details]
	2005	'Three-dimensional image encryption, transmission, and processing by using digital holography' Javidi, B., E. Tajahuerce, T. J. Naughton, Y. Frauel and O. Matoba (2005) 'Three-dimensional image encryption, transmission, and processing by using digital holography' In: Systems of Optical Security, Proceedings of SPIE vol. 5954. Bellingham: SPIE Press. [Details]
	2005	'Digital optics, digital holography, and optical encryption' Monaghan, D. S., U. Gopinathan, B. M. Hennelly, T. J. Naughton and J. T. Sheridan (2005) 'Digital optics, digital holography, and optical encryption' In: Optical Information Systems III, Proceedings of SPIE vol. 5912. Bellingham: SPIE Press. [Details]
	2005	'Compression of digital holograms of three-dimensional objects using the wavelet transform' Shortt, A. E., T. J. Naughton and B. Javidi (2005) 'Compression of digital holograms of three-dimensional objects using the wavelet transform' In: Optical Information Systems III, Proceedings of SPIE vol. 5911. Bellingham: SPIE Press. [Details]
	2005	'ndependent component analysis applied to digital holograms of three-dimensional object' Maycock, J., C. P. Mc Elhinney, T. J. Naughton, J. B. McDonald and B. Javidi (2005) 'ndependent component analysis applied to digital holograms of three-dimensional object' In: Optical Information Systems III, Proceedings of SPIE vol. 5910. Bellingham: SPIE Press. [Details]
	2005	'Extraction of three-dimensional shape information from a digital hologram' Mc Elhinney, C. P., J. Maycock, T. J. Naughton, J. B. McDonald and B. Javidi (2005) 'Extraction of three-dimensional shape information from a digital hologram' In: Optical Information Systems III, Proceedings of SPIE vol. 5909. Bellingham: SPIE Press. [Details]
	2005	'Nonuniform quantization for compression of encrypted digital holograms' Shortt, A. E., T. J. Naughton and B. Javidi (2005) 'Nonuniform quantization for compression of encrypted digital holograms' In: Optical Information Systems III, Proceedings of SPIE vol. 5908. Bellingham: SPIE Press. [Details]
	2005	'A high throughput bioinformatics distributed computing platform' Keane, T. M., A. J. Page, J. O. McInerney and T. J. Naughton (2005) 'A high throughput bioinformatics distributed computing platform' In: 18th IEEE International Symposium on Computer-Based Medical Systems. New York: IEE Press. [Details]
	2005	'Compression of digital holograms for secure three-dimensional image storage and transmission' Naughton, T. J. and B. Javidi (2005) 'Compression of digital holograms for secure three-dimensional image storage and transmission' In: Optical and Digital Techniques for Information Security. Berlin: Springer-Verlag. [Details]
	2005	'New developments in active and passive 3D image sensing, visualization, and processing' Javidi, B., E. Tajahuerce, M. Martínez-Corral, T. J. Naughton and Y. Frauel (2005) 'New developments in active and passive 3D image sensing, visualization, and processing' In: Unmanned/Unattended Sensors and Sensor Networks II, Proceedings of SPIE vol. 5987. Bellingham: SPIE Press. [full-text] [Details]
	2004	'Nonuniform quantization compression techniques for digital holograms of three-dimensional objects' A.E. Shortt, T.J. Naughton, and B. Javidi (2004) 'Nonuniform quantization compression techniques for digital holograms of three-dimensional objects' In: Optical Information Systems II, Proceedings of SPIE vol. 5557. Bellingham: SPIE Press. [Details]
	2004	'Compression of digital holograms for secure three-dimensional image storage and transmission' T. J. Naughton and B. Javidi (2004) 'Compression of digital holograms for secure three-dimensional image storage and transmission' In: Optical and Digital Techniques for Information Security. Berlin: Springer-Verlag. [Details]
	2004	'Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects' C.P. Mc Elhinney, A.E. Shortt, T.J. Naughton, and B. Javidi (2004) 'Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects' In: Optical Information Systems II, Proceedings of SPIE vol. 5557. Bellingham: SPIE Press. [Details]
	2004	'Three-dimensional image sensing, encryption, compression, and transmission using digital holography' T.J. Naughton, E. Tajahuerce, J.B. Mc Donald, and B. Javidi (2004) 'Three-dimensional image sensing, encryption, compression, and transmission using digital holography' In: Unmanned/Unattended Sensors and Sensor Networks, Proceedings of SPIE vol. 5611. Bellingham: SPIE Press. [full-text] [Details]
	2002	'Distributed computing for DNA analysis' T. Keane, R. Allen, T. J. Naughton, J. McInerney and J. Waldron (2002) 'Distributed computing for DNA analysis' In: Recent Advances in Java Technology: Theory, Application, Implementation. Dublin: Computer Science Press, Trinity College. [full-text] [Details]
	2002	'Compression of digital holograms for three-dimensional video' T J. Naughton, Y. Frauel, O. Matoba, B. Javidi and E. Tajahuerce (2002) 'Compression of digital holograms for three-dimensional video' In: Three Dimensional Television, Video and Display Technologies. Berlin: Springer-Verlag. [Details]
	2002	'Emulation of an unconventional model of computation in Java' A. Delaney and T.J. Naughton (2002) 'Emulation of an unconventional model of computation in Java' In: Recent Advances in Java Technology: Theory, Application, Implementation. Dublin: Computer Science Press, Trinity College. [full-text] [Details]

Edited Books

	Year	Publication
	2010	Proceedings of 9th Euro-American Workshop on Information Optics, Finland, Helsinki, 12- 16 July 2010 T.J. Naughton, B. Javidi, A.T. Friberg, J. Tuovinen (Ed.). (2010) Proceedings of 9th Euro-American Workshop on Information Optics, Finland, Helsinki, 12- 16 July 2010 Hoboken NJ: IEEE Press. [Details]
	2005	Optics in Information Systems, Special issue on Optical Encryption, vol. 16., no. 1 Naughton, TJ;Sheridan, JT (Ed.). (2005) Optics in Information Systems, Special issue on Optical Encryption, vol. 16., no. 1 Bellingham: SPIE Press. [Details]
	2003	Proceedings of ISICT 2003 - International Symposium on Information and Communication Technologies, Dublin, Ireland, 24-26 September 2003 M. Aleksy, T. Coffey, A. Fong, R. Gitzel, D. Lewis, F. Masulli, L. Moreno, T. Naughton, D. O'Sullivan, C. Roda, P. Rosso, S. Rovetta, J. Thomas, and J. Waldron (Ed.). (2003) Proceedings of ISICT 2003 - International Symposium on Information and Communication Technologies, Dublin, Ireland, 24-26 September 2003 Dublin: Trinity Press. [Details]

Peer Reviewed Journals

	Year	Publication
	2018	'Space-variant video compression and processing in digital holographic microscopy sensor networks with application to potable water monitoring' Pitkäaho T.;Pitkäkangas V.;Niemelä M.;Rajput S.;Nishchal N.;Naughton T. (2018) 'Space-variant video compression and processing in digital holographic microscopy sensor networks with application to potable water monitoring'. Journal of Applied Optics, 57 (22):E190-E198 [DOI] [full-text] [Details]
	2018	'HER2 challenge contest: a detailed assessment of automated HER2 scoring algorithms in whole slide images of breast cancer tissues' Qaiser T.;Mukherjee A.;Reddy PB C.;Munugoti S.;Tallam V.;Pitkäaho T.;Lehtimäki T.;Naughton T.;Berseth M.;Pedraza A.;Mukundan R.;Smith M.;Bhalerao A.;Rodner E.;Simon M.;Denzler J.;Huang C.;Bueno G.;Snead D.;Ellis I.;Ilyas M.;Rajpoot N. (2018) 'HER2 challenge contest: a detailed assessment of automated HER2 scoring algorithms in whole slide images of breast cancer tissues'. Histopathology, 72 (2):227-238 [DOI] [full-text] [Details]
	2017	'Wireless Holographic Image Communications Relying on Unequal Error Protected Bitplanes' Huo Y.;Kovács P.;Naughton T.;Hanzo L. (2017) 'Wireless Holographic Image Communications Relying on Unequal Error Protected Bitplanes'. IEEE Transactions on Vehicular Technology, 66 (8):7136-7148 [DOI] [full-text] [Details]
	2014	'Multiwavefront digital holographic television' Kujawinska, M;Kozacki, T;Falldorf, C;Meeser, T;Hennelly, BM;Garbat, P;Zaperty, W;Niemela, M;Finke, G;Kowiel, M;Naughton, T (2014) 'Multiwavefront digital holographic television'. Optics Express, 22 :2324-2336 [DOI] [full-text] [Details]
	2012	'Optical Computing: Photonic neural networks' Woods, D;Naughton, TJ (2012) 'Optical Computing: Photonic neural networks'. Nature Physics, 8 :257-259 [DOI] [full-text] [Details]
	2011	'Enhancement of three-dimensional perception of numerical hologram reconstructions of real-world objects by motion and stereo' Nasanen, R;Colomb, T;Emery, Y;Naughton, TJ (2011) 'Enhancement of three-dimensional perception of numerical hologram reconstructions of real-world objects by motion and stereo'. Optics Express, 19 :16075-16086 [DOI] [full-text] [Details]
	2011	'Calculating depth maps from digital holograms using stereo disparity' Pitkaaho, T;Naughton, TJ (2011) 'Calculating depth maps from digital holograms using stereo disparity'. Optics Letters, 36 :2035-2037 [full-text] [Details]
	2011	'Flexible optical encryption with multiple users and multiple security levels' Nishchal, NK;Naughton, TJ (2011) 'Flexible optical encryption with multiple users and multiple security levels'. Optics Communications, 284 :735-739 [DOI] [full-text] [Details]
	2010	'Holographic display of synthetic 3D dynamic scene' Paturzo M.;Memmolo P.;Finizio A.;Nasanen R.;Naughton T.;Ferraro P. (2010) 'Holographic display of synthetic 3D dynamic scene'. 3D Research, 1 (2):31-35 [DOI] [full-text] [Details]
	2010	'Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system' Page, AJ;Keane, TM;Naughton, TJ (2010) 'Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system'. Journal of Parallel and Distributed Computing, 70 :758-766 [DOI] [full-text] [Details]
	2010	'Reconstruction algorithms applied to in-line Gabor digital holographic microscopy' Molony, KM;Hennelly, BM;Kelly, DP;Naughton, TJ (2010) 'Reconstruction algorithms applied to in-line Gabor digital holographic microscopy'. Optics Communications, 283 :903-909 [DOI] [full-text] [Details]
	2010	'Microparticle characterization using digital holography' Darakis, E;Khanam, T;Rajendran, A;Kariwala, V;Naughton, TJ;Asundi, AK (2010) 'Microparticle characterization using digital holography'. Chemical Engineering Sciences, 65 :1037-1044 [DOI] [full-text] [Details]
	2010	'Synthesis and display of dynamic holographic 3D scenes with real-world objects' Paturzo, M;Memmolo, P;Finizio, A;Nasanen, R;Naughton, TJ;Ferraro, P (2010) 'Synthesis and display of dynamic holographic 3D scenes with real-world objects'. Optics Express, 18 :8806-8815 [DOI] [full-text] [Details]
	2009	'Three dimensional digital holographic profiling of micro-fibers' Kempkes, M;Darakis, E;Khanam, T;Rajendran, A;Kariwala, V;Mazzotti, M;Naughton, TJ;Asundi, AK (2009) 'Three dimensional digital holographic profiling of micro-fibers'. Optics Express, 17 :2938-2943 [DOI] [full-text] [Details]
	2009	'Resolution limits in practical digital holographic systems' Kelly, DP;Hennelly, BM;Pandey, N;Naughton, TJ;Rhodes, WT (2009) 'Resolution limits in practical digital holographic systems'. Optical Engineering, 48 [DOI] [full-text] [Details]
	2009	'Systematic errors of an optical encryption system due to the discrete values of a spatial light modulator' Monaghan, DS;Gopinathan, U;Kelly, DP;Naughton, TJ;Sheridan, JT (2009) 'Systematic errors of an optical encryption system due to the discrete values of a spatial light modulator'. Optical Engineering, 48 [DOI] [full-text] [Details]
	2009	'Optical computing' Woods, D;Naughton, TJ (2009) 'Optical computing'. Applied Mathematics and Computation, 215 :1417-1430 [DOI] [full-text] [Details]
	2009	'Analysis of phase encoding for optical encryption' Monaghan, DS;Situ, G;Gopinathan, U;Naughton, TJ;Sheridan, JT (2009) 'Analysis of phase encoding for optical encryption'. Optics Communications, 282 :482-492 [DOI] [full-text] [Details]
	2009	'Statistical investigation of the double random phase encoding technique' Monaghan, DS;Gopinathan, U;Situ, G;Naughton, TJ;Sheridan, JT (2009) 'Statistical investigation of the double random phase encoding technique'. Journal Of The Optical Society Of America A-Optics Image Science And Vision, 26 :2033-2042 [full-text] [Details]
	2009	'Perceptual quality of reconstructions of digital holograms: extending depth of focus by binocular fusion' Nasanen, R;Metso, A;Lehtimaki, TM;Naughton, TJ (2009) 'Perceptual quality of reconstructions of digital holograms: extending depth of focus by binocular fusion'. Perception, 38 :154-155 [full-text] [Details]
	2009	'Using Commodity Graphics Hardware for Real-Time Digital Hologram View-Reconstruction' Ahrenberg, L;Page, AJ;Hennelly, BM;McDonald, JB;Naughton, TJ (2009) 'Using Commodity Graphics Hardware for Real-Time Digital Hologram View-Reconstruction'. IEEE/OSA Journal of Display Technology, 5 :111-119 [DOI] [full-text] [Details]
	2008	'Extended focused imaging for digital holograms of macroscopic three-dimensional objects' McElhinney, CP;Hennelly, BM;Naughton, TJ (2008) 'Extended focused imaging for digital holograms of macroscopic three-dimensional objects'. Journal of Applied Optics, 47 :71-79 [full-text] [Details]
	2008	'Scheduling in a dynamic heterogeneous distributed system using estimation error' Page, AJ;Keane, TM;Naughton, TJ (2008) 'Scheduling in a dynamic heterogeneous distributed system using estimation error'. Journal of Parallel and Distributed Computing, 68 :1452-1462 [DOI] [full-text] [Details]
	2008	'Role of phase key in the double random phase encoding technique: an error analysis' Monaghan, DS;Situ, G;Gopinathan, U;Naughton, TJ;Sheridan, JT (2008) 'Role of phase key in the double random phase encoding technique: an error analysis'. Journal of Applied Optics, 47 :3808-3816 [full-text] [Details]
	2008	'Implementations of a model of physical sorting' Murphy, N.; Naughton, T. J.; Woods, D.; Henley, B.; McDermott, K.; Duffy, E.; van der Burgt, P. J. M. ; Woods, N. (2008) 'Implementations of a model of physical sorting'. International Journal of Unconventional Computing, 4 :3-12 [full-text] [Details]
	2008	'Low memory distributed reconstruction of large digital holograms' Page, AJ;Ahrenberg, L;Naughton, TJ (2008) 'Low memory distributed reconstruction of large digital holograms'. Optics Express, 16 :1990-1995 [full-text] [Details]
	2008	'Noninterferometric phase retrieval using a fractional Fourier system' Gopinathan, U;Situ, G;Naughton, TJ;Sheridan, JT (2008) 'Noninterferometric phase retrieval using a fractional Fourier system'. Journal Of The Optical Society Of America A-Optics Image Science And Vision, 25 :108-115 [full-text] [Details]
	2008	'Collision in double random phase encoding' Situ, G;Monaghan, DS;Naughton, TJ;Sheridan, JT;Pedrini, G;Osten, W (2008) 'Collision in double random phase encoding'. Optics Communications, 281 :5122-5125 [DOI] [full-text] [Details]
	2007	'MultiPhyl: a high-throughput phylogenomics webserver using distributed computing' Keane, TM;Naughton, TJ;McInerney, JO (2007) 'MultiPhyl: a high-throughput phylogenomics webserver using distributed computing'. Nucleic Acids Research, 35 :33-37 [DOI] [full-text] [Details]
	2007	'Resistance of the double random phase encryption against various attacks' Frauel, Y;Castro, A;Naughton, TJ;Javidi, B (2007) 'Resistance of the double random phase encryption against various attacks'. Optics Express, 15 :10253-10265 [full-text] [Details]
	2007	'Key-space analysis of double random phase encryption technique' Monaghan, DS;Gopinathan, U;Naughton, TJ;Sheridan, JT (2007) 'Key-space analysis of double random phase encryption technique'. Journal of Applied Optics, 46 :6641-6647 [full-text] [Details]
	2007	'Depth-independent segmentation of macroscopic three-dimensional objects encoded in single perspectives of digital holograms' McElhinney, CP;McDonald, JB;Castro, A;Frauel, Y;Javidi, B;Naughton, TJ (2007) 'Depth-independent segmentation of macroscopic three-dimensional objects encoded in single perspectives of digital holograms'. Optics Letters, 32 :1229-1231 [full-text] [Details]
	2007	'Histogram approaches for lossy compression of digital holograms of three-dimensional objects' Shortt, AE;Naughton, TJ;Javidi, B (2007) 'Histogram approaches for lossy compression of digital holograms of three-dimensional objects'. IEEE Transactions on Image Processing, 16 :1548-1556 [DOI] [full-text] [Details]
	2007	'Spread-space spread-spectrum technique for secure multiplexing' Hennelly, BM;Naughton, TJ;McDonald, J;Sheridan, JT;Unnikrishnan, G;Kelly, DP;Javidi, B (2007) 'Spread-space spread-spectrum technique for secure multiplexing'. Optics Letters, 32 :1060-1062 [full-text] [Details]
	2007	'Compression defects in different reconstructions from phase-shifting digital holographic data' Darakis, E;Naughton, TJ;Soraghan, JJ (2007) 'Compression defects in different reconstructions from phase-shifting digital holographic data'. Journal of Applied Optics, 46 :4579-4586 [full-text] [Details]
	2006	'A companding approach for nonuniform quantization of digital holograms of three-dimensional objects' Shortt, AE;Naughton, TJ;Javidi, B (2006) 'A companding approach for nonuniform quantization of digital holograms of three-dimensional objects'. Optics Express, 14 :5129-5134 [full-text] [Details]
	2006	'Three-dimensional imaging and processing using computational holographic imaging' Frauel, Y;Naughton, TJ;Matoba, O;Tajahuerce, E;Javidi, B (2006) 'Three-dimensional imaging and processing using computational holographic imaging'. Proceedings of the IEEE, 94 :636-653 [DOI] [full-text] [Details]
	2006	'Reconstruction of partially occluded objects encoded in three-dimensional scenes by using digital holograms' Maycock, J;McElhinney, CP;Hennelly, BM;Naughton, TJ;McDonald, JB;Javidi, B (2006) 'Reconstruction of partially occluded objects encoded in three-dimensional scenes by using digital holograms'. Journal of Applied Optics, 45 :2975-2985 [full-text] [Details]
	2006	'Compression of digital holograms of three-dimensional objects using wavelets' Shortt, AE;Naughton, TJ;Javidi, B (2006) 'Compression of digital holograms of three-dimensional objects using wavelets'. Optics Express, 14 :2625-2630 [full-text] [Details]
	2006	'Building large phylogenetic trees on coarse-grained parallel machines' Keane, TM;Page, AJ;Naughton, TJ;Travers, SAA;McInerney, JO (2006) 'Building large phylogenetic trees on coarse-grained parallel machines'. Algorithmica, 45 :285-300 [DOI] [full-text] [Details]
	2006	'Compression of Optically Encrypted Digital Holograms Using Artificial Neural Networks' Shortt, AE;Naughton, TJ;Javidi, B (2006) 'Compression of Optically Encrypted Digital Holograms Using Artificial Neural Networks'. IEEE/OSA Journal of Display Technology, 2 :401-410 [DOI] [full-text] [Details]
	2006	'Polarization encoding and multiplexing of two-dimensional signals: application to image encryption' Gopinathan, U;Naughton, TJ;Sheridan, JT (2006) 'Polarization encoding and multiplexing of two-dimensional signals: application to image encryption'. Journal of Applied Optics, 45 :5693-5700 [full-text] [Details]
	2006	'Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified' Keane, TM;Creevey, CJ;Pentony, MM;Naughton, TJ;McInerney, JO (2006) 'Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified'. BMC Evolutionary Biology, 6 [DOI] [full-text] [Details]
	2006	'A known-plaintext heuristic attack on the Fourier plane encryption algorithm' Gopinathan, U;Monaghan, DS;Naughton, TJ;Sheridan, JT (2006) 'A known-plaintext heuristic attack on the Fourier plane encryption algorithm'. Optics Express, 14 :3181-3186 [full-text] [Details]
	2005	'An optical model of computation' Woods, D;Naughton, TJ (2005) 'An optical model of computation'. Theoretical Computer Science, 334 :227-258 [DOI] [full-text] [Details]
	2005	'DPRml: distributed phylogeny reconstruction by maximum likelihood' Keane, TM;Naughton, TJ;Travers, SAA;McInerney, JO;McCormack, GP (2005) 'DPRml: distributed phylogeny reconstruction by maximum likelihood'. Bioinformatics, 21 :969-974 [DOI] [full-text] [Details]
	2005	'DSEARCH: sensitive database searching using distributed computing' Keane, TM;Naughton, TJ (2005) 'DSEARCH: sensitive database searching using distributed computing'. Bioinformatics, 21 :1705-1706 [DOI] [full-text] [Details]
	2004	'Compression of encrypted three-dimensional objects using digital holography' Naughton, TJ;Javidi, B (2004) 'Compression of encrypted three-dimensional objects using digital holography'. Optical Engineering, 43 :2233-2238 [DOI] [full-text] [Details]
	2003	'Efficient compression of Fresnel fields for internet transmission of three-dimensional images' Naughton, TJ;McDonald, JB;Javidi, B (2003) 'Efficient compression of Fresnel fields for internet transmission of three-dimensional images'. Journal of Applied Optics, 42 :4758-4764 [full-text] [Details]
	2002	'Real-time three-dimensional object reconstruction by use of a phase-encoded digital hologram' Matoba, O;Naughton, TJ;Frauel, Y;Bertaux, N;Javidi, B (2002) 'Real-time three-dimensional object reconstruction by use of a phase-encoded digital hologram'. Journal of Applied Optics, 41 :6187-6192 [full-text] [Details]
	2002	'Compression of digital holograms for three-dimensional object reconstruction and recognition' Naughton, TJ;Frauel, Y;Javidi, B;Tajahuerce, E (2002) 'Compression of digital holograms for three-dimensional object reconstruction and recognition'. Journal of Applied Optics, 41 :4124-4132 [full-text] [Details]
	2008	'Introducing Secure Modes of Operation for Optical Encryption' Naughton, T.J., T. Dowling and B. M. Hennelly (2008) 'Introducing Secure Modes of Operation for Optical Encryption'. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA - A, 25 :2608-2617 [full-text] [Details]
	2008	'Role of Phase Keys in the Double Random Phase Encoding Technique: an Error Analysis' Monaghan, D.S., U. Gopinathan, T.J. Naughton, G. Situ and J.T. Sheridan (2008) 'Role of Phase Keys in the Double Random Phase Encoding Technique: an Error Analysis'. Journal of Applied Optics, 47 :3808-3816 [full-text] [Details]
	2008	'Noninterferometric Phase Retrieval using a Fractional Fourier System' Gopinathan, U., T.J. Naughton, J.T. Sheridan and G. Situ (2008) 'Noninterferometric Phase Retrieval using a Fractional Fourier System'. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA - A, 25 :108-115 [full-text] [Details]
	2008	'Introducing secure modes of operation for optical encryption' Naughton T.;Hennelly B.;Dowling T. (2008) 'Introducing secure modes of operation for optical encryption'. Journal Of The Optical Society Of America A-Optics Image Science And Vision, 25 (10):2608-2617 [DOI] [full-text] [Details]
	2008	'A projection system for real world three-dimensional objects using spatial light modulators' Gopinathan U.;Monaghan D.;Hennelly B.;Mc Elhinney C.;Kelly D.;McDonald J.;Naughton T.;Sheridan J. (2008) 'A projection system for real world three-dimensional objects using spatial light modulators'. IEEE/OSA Journal of Display Technology, 4 (2):254-261 [DOI] [full-text] [Details]
	2007	'Reduction of speckle in digital holography by discrete Fourier filtering' Maycock J.;Hennelly B.;McDonald J.;Frauel Y.;Castro A.;Javidi B.;Naughton T. (2007) 'Reduction of speckle in digital holography by discrete Fourier filtering'. Journal Of The Optical Society Of America A-Optics Image Science And Vision, 24 (6):1617-1622 [DOI] [full-text] [Details]
	2006	'Reconstruction of partially occluded objects encoded in three-dimensional scenes using digital holograms' J. Maycock, C.P. McElhinney, B.M. Hennelly, T.J. Naughton, J.B. McDonald, and B. Javidi (2006) 'Reconstruction of partially occluded objects encoded in three-dimensional scenes using digital holograms'. Journal of Applied Optics, 45 :2975-2985 [full-text] [Details]
	2006	'Compression of encrypted digital holograms using artificial neural networks' A.E. Shortt, T.J. Naughton, and B. Javidi (2006) 'Compression of encrypted digital holograms using artificial neural networks'. IEEE/OSA Journal of Display Technology, 2 :401-410 [full-text] [Details]
	2005	'Framework for task scheduling in heterogeneous distributed computing using genetic algorithms' Page, A. J. and T. J. Naughton (2005) 'Framework for task scheduling in heterogeneous distributed computing using genetic algorithms'. ARTIFICIAL INTELLIGENCE REVIEW, 24 :415-429 [full-text] [Details]
	2005	'Compression of encrypted digital holograms using artificial neural networks' Shortt, A. E., T. J. Naughton and B. Javidi (2005) 'Compression of encrypted digital holograms using artificial neural networks'. OPTICS IN INFORMATION SYSTEMS, 16 :1-8 [full-text] [Details]
	2004	'Efficient compression of Fresnel fields for Internet transmission of 3D images' T.J. Naughton, J.B. McDonald, and B. Javidi (2004) 'Efficient compression of Fresnel fields for Internet transmission of 3D images'. IEEE LASERS AND ELECTRO-OPTICS SOCIETY NEWSLETTER, 18 :9-10 [full-text] [Details]
	2003	'Efficient compression of Fresnel fields for Internet transmission of three-dimensional images' T.J. Naughton, J.B. Mc Donald, B. Javidi (2003) 'Efficient compression of Fresnel fields for Internet transmission of three-dimensional images'. APPLIED OPTICS, 42 :4758-4764 [full-text] [Details]
	2002	'Compression of digital holograms for three-dimensional object reconstruction and recognition' T.J. Naughton, Y. Frauel, B. Javidi, and E. Tajahuerce (2002) 'Compression of digital holograms for three-dimensional object reconstruction and recognition'. APPLIED OPTICS, 41 :4124-4132 [full-text] [Details]
	1999	'General-purpose acousto-optic connectionist processor' Naughton, T;Javadpour, Z;Keating, J;Klima, M;Rott, J (1999) 'General-purpose acousto-optic connectionist processor'. Optical Engineering, 38 :1170-1177 [full-text] [Details]

Conference Publications

	Year	Publication
	2018	Detecting the presence of a transparent object in off-axis digital holograms Pitkäaho T.;Manninen A.;Naughton T. (2018) Detecting the presence of a transparent object in off-axis digital holograms Digital Holography and Three- Dimensional Imaging 2018 (part of Imaging and Applied Optics 2018) [DOI] [full-text] [Details]
	2018	Towards Perception-Inspired Numerical Measures of Compression Error in Digital Holograms of Natural Three- Dimensional Scenes Taina M. Lehtimäki, Ronan G. Reilly, and Thomas J. Naughton (2018) Towards Perception-Inspired Numerical Measures of Compression Error in Digital Holograms of Natural Three- Dimensional Scenes Digital Holography and Three- Dimensional Imaging 2018 (part of Imaging and Applied Optics 2018) [DOI] [full-text] [Details]
	2018	Principal component analysis on time-lapse captured digital holograms of cell clusters Pitkäaho T.;Manninen A.;Naughton T. (2018) Principal component analysis on time-lapse captured digital holograms of cell clusters Biophotonics Congress: Biomedical Optics Congress 2018 [DOI] [full-text] [Details]
	2018	Temporal deep learning classification of digital hologram reconstructions of multicellular samples Pitkäaho T.;Manninen A.;Naughton T. (2018) Temporal deep learning classification of digital hologram reconstructions of multicellular samples Biophotonics Congress: Biomedical Optics Congress 2018 [DOI] [full-text] [Details]
	2018	Classification of digital holograms with deep learning and hand-crafted features Pitkäaho T.;Manninen A.;Naughton T. (2018) Classification of digital holograms with deep learning and hand-crafted features Digital Holography and Three- Dimensional Imaging 2018 (part of Imaging and Applied Optics 2018) [DOI] [full-text] [Details]
	2017	In-focus depth estimation using deep learning of cells encoded in digital holograms Tomi Pitkäaho, Aki Manninen, and Thomas J. Naughton (2017) In-focus depth estimation using deep learning of cells encoded in digital holograms Photonics Ireland 2017 [Details]
	2017	Digital holographic microscopy in remote potable water monitoring Pitkäaho T.;Pitkäkangas V.;Niemelä M.;Rajput S.;Nishchal N.;Naughtona T. (2017) Digital holographic microscopy in remote potable water monitoring Digital Holography and Three- Dimensional Imaging [DOI] [full-text] [Details]
	2017	Deep convolutional neural networks and digital holographic microscopy for in-focus depth estimation of microscopic objects Tomi Pitkaaho, Aki Manninen and Thomas Naughton (2017) Deep convolutional neural networks and digital holographic microscopy for in-focus depth estimation of microscopic objects Irish Machine Vision and Image Processing Conference 2017 [full-text] [Details]
	2017	Digital holographic microscopy sensor network and image compression in remote potable water monitoring Tomi Pitkäaho, Ville Pitkäkangas, Mikko Niemelä, Sudheesh K. Rajput, Naveen K. Nishchal and Thomas J. Naughton (2017) Digital holographic microscopy sensor network and image compression in remote potable water monitoring Photonics Ireland 2017 [Details]
	2017	Implementing the counter operating mode in optical image encryption Lingfei Zhang, Thomas J. Naughton (2017) Implementing the counter operating mode in optical image encryption Photonics Ireland 2017 [Details]
	2017	Focus classification in digital holographic microscopy using deep convolutional neural networks Pitkäaho T.;Manninen A.;Naughton T. (2017) Focus classification in digital holographic microscopy using deep convolutional neural networks Progress in Biomedical Optics and Imaging - Proceedings of SPIE [DOI] [full-text] [Details]
	2017	Study of imperfect keys to characterise the security of optical encryption Lingfei Zhang, Thomas J. Naughton (2017) Study of imperfect keys to characterise the security of optical encryption Irish Machine Vision and Image Processing Conference 2017 [full-text] [Details]
	2017	Towards perception inspired numerical measures of compression error in digital holograms of natural three-dimensional scenes Taina Lehtimäki, Ronan Reilly, Thomas Naughton (2017) Towards perception inspired numerical measures of compression error in digital holograms of natural three-dimensional scenes 40th European Conference on Visual Perception (ECVP 2017) [Details]
	2017	Vesicle tracking with digital holographic microscopy and image analyses Tomi Pitkäaho, Aki Manninen, and Thomas J. Naughton (2017) Vesicle tracking with digital holographic microscopy and image analyses Photonics Ireland 2017 [Details]
	2017	Study of fixations and saccades when viewing holograms, stereo images, and 2D images Taina M. Lehtimäki, Mikko Niemelä, Risto Näsänen, Ronan G. Reilly, and Thomas J. Naughton (2017) Study of fixations and saccades when viewing holograms, stereo images, and 2D images 19th European Conference on Eye Movements [Details]
	2017	Unequal error protected bitplanes improve the robustness of wireless holographic image communications Huo Y.;Naughton T.;Hanzo L. (2017) Unequal error protected bitplanes improve the robustness of wireless holographic image communications Digital Holography and Three- Dimensional Imaging [DOI] [full-text] [Details]
	2017	Digital holographic sensor network and image analyses for distributed potable water monitoring Tomi Pitkäaho, Ville Pitkäkangas, Mikko Niemelä, Sudheesh K. Rajput, Naveen K. Nishchal and Thomas J. Naughton (2017) Digital holographic sensor network and image analyses for distributed potable water monitoring Irish Machine Vision and Image Processing Conference 2017 [full-text] [Details]
	2017	Performance of autofocus capability of deep convolutional neural networks in digital holographic microscopy Pitkäaho T.;Manninen A.;Naughton T. (2017) Performance of autofocus capability of deep convolutional neural networks in digital holographic microscopy Digital Holography and Three- Dimensional Imaging [DOI] [full-text] [Details]
	2016	Using traditional glass plate holograms to study visual perception of future digital holographic displays Lehtimäki T.;Niemelä M.;Näsänen R.;Reilly R.;Naughton T. (2016) Using traditional glass plate holograms to study visual perception of future digital holographic displays Optics InfoBase Conference Papers [DOI] [full-text] [Details]
	2016	Monitoring MDCK cell vesicles by digital holographic microscopy and image processing Pitkaaho T.;Naughton T. (2016) Monitoring MDCK cell vesicles by digital holographic microscopy and image processing Optics InfoBase Conference Papers [full-text] [Details]
	2016	Eye movements during perception of 3D scenes using hologram and stereo image stimuli Lehtimaki, TM;Niemela, M;Nasanen, R;Reilly, RG;Naughton, TJ (2016) Eye movements during perception of 3D scenes using hologram and stereo image stimuli European Conference on Visual Perception 2016 , pp.113-114 [Details]
	2015	Image processing and analysis of digital holograms of three-dimensional biological samples T. Pitkäaho, K. Zhang, A. Manninen, and T.J. Naughton (2015) Image processing and analysis of digital holograms of three-dimensional biological samples Photonics Ireland 2015 Cork, Ireland, [Details]
	2015	Digital holographic microscopy in morphometric analysis of three-dimensional cell cultures Pitkäaho, T; Manninen, A; Naughton, TJ (2015) Digital holographic microscopy in morphometric analysis of three-dimensional cell cultures European Conference on Lasers and Electro-Optics - European Quantum Electronics Conference Munich, Germany, [DOI] [Details]
	2015	Improved characterisation of the security of double random phase optical encryption Lingfei Zhang and T.J. Naughton (2015) Improved characterisation of the security of double random phase optical encryption Photonics Ireland 2015 Cork, Ireland, [Details]
	2014	Digital holographic microscopy in morphometric analysis of threedimensional cell cultures Pitkäaho T.;Manninen A.;Naughton T. (2014) Digital holographic microscopy in morphometric analysis of threedimensional cell cultures Optics InfoBase Conference Papers [Details]
	2014	Speckle noise reduction in Michelson digital holography using known or unknown reference linear phases and image processing PitkÃ¤aho T.;Naughton T. (2014) Speckle noise reduction in Michelson digital holography using known or unknown reference linear phases and image processing Fringe 2013 - 7th International Workshop on Advanced Optical Imaging and Metrology Nürtingen, Germany, , 08-SEP-13 - 11-SEP-13 , pp.649-652 [DOI] [full-text] [Details]
	2014	PACT: An initiative to introduce computational thinking to second-level education in Ireland A. Mooney, J. Duffin, T. Naughton, R. Monahan, J. Power and P. Maguire (2014) PACT: An initiative to introduce computational thinking to second-level education in Ireland International Conference on Engaging Pedagogy 2014 Athlone, Ireland, , pp.1-14 [full-text] [Details]
	2013	Automated reconstruction and noise reduction of three-dimensional objects encoded in digital holograms M. Imbe, D. Neylon, T. Pitkäaho, T. Nomura, and T.J. Naughton (2013) Automated reconstruction and noise reduction of three-dimensional objects encoded in digital holograms Photonics Ireland 2013 Belfast, Ireland, [Details]
	2013	Speckle noise reduction in Michelson digital holography using known or unknown reference linear phases and image processing T. Pitkäaho and T.J. Naughton (2013) Speckle noise reduction in Michelson digital holography using known or unknown reference linear phases and image processing Photonics Ireland 2013 Belfast, Ireland, [full-text] [Details]
	2013	Speckle reduction for optoelectronic holographic display using Fourier orientation band partitioning R. Näsänen, T. Pitkäaho, and T.J. Naughton (2013) Speckle reduction for optoelectronic holographic display using Fourier orientation band partitioning Photonics Ireland 2013 Belfast, Ireland, [Details]
	2011	Digital holograms and conventional 3D displays T. Pitkäaho and T.J. Naughton (2011) Digital holograms and conventional 3D displays Photonics Ireland 2011 Dublin, Ireland, [Details]
	2011	3D capture, processing, display, and perception with digital holography: results from a European-funded project (Invited paper) Naughton, TJ; Falldorf, C; Onural, L; Ferraro, P; Depeursinge, CD; Krueger, S; Emery, Y; Hennelly, BM; Kujawinska, M (2011) 3D capture, processing, display, and perception with digital holography: results from a European-funded project (Invited paper) Digital Holography and Three-Dimensional Imaging [full-text] [Details]
	2011	Digital watermarking to prevent digital hologram piracy Nishchal, N.K.; Pitkäaho, T,; Naughton, T.J. (2011) Digital watermarking to prevent digital hologram piracy XXXVI OSI Symposiom on Frontiers in Optics and Photonics New Delhi, India, , pp.1-4 [Details]
	2011	Comparing numerical error and visual quality in reconstructions from compressed digital holograms T.M. Lehtimäki, K. Sääskilahti, T. Pitkäaho, and T.J. Naughton (2011) Comparing numerical error and visual quality in reconstructions from compressed digital holograms Photonics Ireland 2011 Dublin, Ireland, [full-text] [Details]
	2010	Evaluation of perceived quality attributes of digital holograms viewed with a stereoscopic display Lehtimaki, TM;Saaskilahti, K;Pitkaaho, T;Naughton, TJ (2010) Evaluation of perceived quality attributes of digital holograms viewed with a stereoscopic display 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	Numerical reconstruction of digital holograms for conventional 3D display Pitkaaho, T;Naughton, TJ (2010) Numerical reconstruction of digital holograms for conventional 3D display 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	3D perception of numerical hologram reconstructions enhanced by motion and stereo Nasanen, R;Colomb, T;Emery, Y;Naughton, TJ (2010) 3D perception of numerical hologram reconstructions enhanced by motion and stereo 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	Displaying digital holograms of real-world objects on a mobile device using tilt-based interaction Lehtimaki, TM;Saaskilahti, K;Kowiel, M;Naughton, TJ (2010) Displaying digital holograms of real-world objects on a mobile device using tilt-based interaction 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	Digital Fresnel Hologram Watermarking Nishchal, NK;Pitkaaho, T;Naughton, TJ (2010) Digital Fresnel Hologram Watermarking 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	Capture, processing, and display of real-world 3D objects using digital holography Naughton, TJ;Falldorf, C;Onural, L;Ferraro, P;Depeursinge, C;Krueger, S;Emery, Y;Hennelly, BM;Kujawinska, M (2010) Capture, processing, and display of real-world 3D objects using digital holography 2010 9TH EURO-AMERICAN WORKSHOP ON INFORMATION OPTICS [full-text] [Details]
	2010	Three-dimensional scene measurement in the presence of speckle using single-capture digital holography and image processing T. Pitkäaho and T.J. Naughton (2010) Three-dimensional scene measurement in the presence of speckle using single-capture digital holography and image processing Finnish Optical Society's Optics Days 2010 , pp.87-88 [Details]
	2010	Phase in Optical Image Processing Naughton, TJ (2010) Phase in Optical Image Processing INTERNATIONAL CONFERENCE ON ADVANCED PHASE MEASUREMENT METHODS IN OPTICS AN IMAGING , pp.235-241 [full-text] [Details]
	2010	Reconstruction of Fresnel digital hologram using fractional Fourier transform algorithm Nishchal, NK;Naughton, TJ (2010) Reconstruction of Fresnel digital hologram using fractional Fourier transform algorithm PHOTONICS 2010 - The International Conference on Fiber Optics and Photonics Guwahati, India, , pp.1-4 [Details]
	2009	Compression of digital hologram sequences using MPEG-4 Darakis, E;Naughton, TJ (2009) Compression of digital hologram sequences using MPEG-4 HOLOGRAPHY: ADVANCES AND MODERN TRENDS [DOI] [full-text] [Details]
	2008	A Comparison of Wavelet Analysis Techniques in Digital Holograms Molony, K.M., J. Maycock, J.B. McDonald, C.P. McElhinney and T.J. Naughton (2008) A Comparison of Wavelet Analysis Techniques in Digital Holograms Photon Management III, Proceedings of SPIE vol. 6994 [full-text] [Details]
	2008	Segmentation of macroscopic object digital holographic reconstructions using extracted depth information Mc Elhinney, CP;Hennelly, BM;McDonald, JB;Naughton, TJ (2008) Segmentation of macroscopic object digital holographic reconstructions using extracted depth information OPTICAL AND DIGITAL IMAGE PROCESSING [DOI] [Details]
	2008	Image processing of real-world three-dimensional objects sensed with digital holography McElhinney, CP;Hennelly, BM;Naughton, TJ (2008) Image processing of real-world three-dimensional objects sensed with digital holography ADVANCED LASER TECHNOLOGIES 2007 [DOI] [Details]
	2008	Twin-image reduction in inline digital holography using an object segmentation heuristic McElhinney, CP;Hennelly, BM;Naughton, TJ (2008) Twin-image reduction in inline digital holography using an object segmentation heuristic SEVENTH INTERNATIONAL WORKSHOP ON INFORMATION OPTICS [DOI] [full-text] [Details]
	2008	Focused image creation approaches for macroscopic objetcs encoded in digital holograms Mc Elhinney, CP;Hennelly, BM;Naughton, TJ (2008) Focused image creation approaches for macroscopic objetcs encoded in digital holograms PHOTON MANAGEMENT III [DOI] [full-text] [Details]
	2008	A comparison of wavelet analysis techniques in digital holograms Molony, KM;Maycock, J;Mc Donald, JB;Hennelly, BM;Naughton, TJ (2008) A comparison of wavelet analysis techniques in digital holograms PHOTON MANAGEMENT III [DOI] [full-text] [Details]
	2008	Segmentation of three-dimensional scenes encoded in digital holograms Molony, KM;McElhinney, CP;Hennelly, BM;Naughton, TJ (2008) Segmentation of three-dimensional scenes encoded in digital holograms OPTICS AND PHOTONICS FOR INFORMATION PROCESSING II [DOI] [Details]
	2008	Segmentation of macroscopic object digital holographic reconstructions using extracted depth information McElhinney, CP and Hennelly, BM and McDonald, JB and Naughton, TJ (2008) Segmentation of macroscopic object digital holographic reconstructions using extracted depth information Photonics Europe , pp.700003-700003 [Details]
	2008	Removing the Twin Image in Digital Holography by Segmented Filtering of In-focus Twin Image McElhinney, C;Hennelly, BM;Ahrenberg, L;Naughton, TJ (2008) Removing the Twin Image in Digital Holography by Segmented Filtering of In-focus Twin Image OPTICS AND PHOTONICS FOR INFORMATION PROCESSING II [DOI] [full-text] [Details]
	2008	A Practical Guide to Digital Holography and Generalized Sampling Kelly, DP;Hennelly, BM;McElhinney, C;Naughton', TJ (2008) A Practical Guide to Digital Holography and Generalized Sampling OPTICS AND PHOTONICS FOR INFORMATION PROCESSING II [DOI] [full-text] [Details]
	2008	Parallel and Sequential Optical Computing Woods, D;Naughton, TJ (2008) Parallel and Sequential Optical Computing OPTICAL SUPERCOMPUTING, PROCEEDINGS [full-text] [Details]
	2007	Segmentation of three-dimensional objects from background in digital holograms Mc Elhinney, CP;McDonald, JB;Castro, A;Frauel, Y;Javidi, B;Naughton, TJ (2007) Segmentation of three-dimensional objects from background in digital holograms IMVIP 2007: INTERNATIONAL MACHINE VISION AND IMAGE PROCESSING CONFERENCE, PROCEEDINGS , pp.41-46 [full-text] [Details]
	2007	Speckle reduction from digital holograms by simulating temporal incoherence [6696-52] Hennelly, BM and Kelly, DP and Maycock, J and Naughton, TJ and McDonald, JB (2007) Speckle reduction from digital holograms by simulating temporal incoherence [6696-52] Speckle reduction from digital holograms by simulating temporal incoherence [6696-52] [Details]
	2007	Segmentation of three-dimensional objects from background in digital holograms McElhinney, CP and McDonald, JB and Castro, Albertina and Frauel, Yann and Javidi, Bahram and Naughton, TJ (2007) Segmentation of three-dimensional objects from background in digital holograms Machine Vision and Image Processing Conference, 2007. IMVIP 2007. International , pp.41-46 [full-text] [Details]
	2007	Imaging through a biological medium using speckle noise removal techniques - art. no. 66291W Cuddihy, A;Hennelly, B;Naughton, TJ;Markham, C;O'Neill, R (2007) Imaging through a biological medium using speckle noise removal techniques - art. no. 66291W Diffuse Optical Imaging of Tissue , pp.6291-6291 [Details]
	2007	Speckle reduction using the discrete Fourier filtering technique Maycock, J;Hennelly, BM;McDonald, JB;Frauel, Y;Castro, A;Javidi, B;Naughton, TJ (2007) Speckle reduction using the discrete Fourier filtering technique IMVIP 2007: INTERNATIONAL MACHINE VISION AND IMAGE PROCESSING CONFERENCE, PROCEEDINGS , pp.201-201 [full-text] [Details]
	2007	Spread space spread spectrum technique for secure multiplexing Hennelly, BM;McDonald, JB;Sheridan, JT;Goplnathan, U;Kelly, DP;Javidi, B;Naughton, TJ (2007) Spread space spread spectrum technique for secure multiplexing 6TH INTERNATIONAL WORKSHOP ON INFORMATION OPTICS (WIO '07) , pp.138-144 [Details]
	2007	Speckle reduction from digital holograms by simulating temporal incoherence - art. no. 66961I Hennelly, BM;Kelly, DP;Maycock, J;Naughton, TJ;McDonald, JB (2007) Speckle reduction from digital holograms by simulating temporal incoherence - art. no. 66961I APPLICATIONS OF DIGITAL IMAGE PROCESSING XXX, PTS 1 AND 2 , pp.6961-6961 [Details]
	2006	B.M. Hennelly, T.J. Naughton, J.B. McDonald, Y. Frauel, and B. Javidi (2006) A method for superresolution in digital holography [Details]
	2006	A method for superresolution in digital holography - art. no. 63110J Hennelly, BM;Naughton, TJ;McDonald, JB;Frauel, Y;Javidi, B (2006) A method for superresolution in digital holography - art. no. 63110J Optical Information Systems IV , pp.3110-3110 [DOI] [Details]
	2006	Wigner distribution function and digital holography - art. no. 63110L Hennelly, BM;Naughton, TJ;McDonald, JB (2006) Wigner distribution function and digital holography - art. no. 63110L Optical Information Systems IV , pp.3110-3110 [DOI] [Details]
	2006	Reconstruction of partially occluded objects using digital holograms Maycock, J;Mc Elhinney, CP;Hennelly, BH;Naughton, TJ;McDonald, JB;Javidi, B (2006) Reconstruction of partially occluded objects using digital holograms PHOTON MANAGEMENT II , pp.332-340 [DOI] [Details]
	2006	Superposition of digital holograms Hennelly, BM;Mc Elhinney, C;Frauel, Y;Naughton, TJ;McDonald, JB;Javidi, B (2006) Superposition of digital holograms Information Optics , pp.281-289 [Details]
	2006	Speckle reduction in digital holography using Independent Component Analysis Maycock, J;McElhinney, CP;McDonald, JB;Naughton, TJ;Hennelly, BM;Javidi, B (2006) Speckle reduction in digital holography using Independent Component Analysis PHOTON MANAGEMENT II , pp.426-437 [DOI] [Details]
	2006	Analysis of partially occluded objects encoded in digital holograms using the Wigner distribution function - art. no. 63110M Hennelly, BH;Maycock, J;Mc Elhinney, CP;Naughton, TJ;McDonald, JB;Javidi, B (2006) Analysis of partially occluded objects encoded in digital holograms using the Wigner distribution function - art. no. 63110M Optical Information Systems IV , pp.3110-3110 [DOI] [Details]
	2006	Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects Shortt, AE;Naughton, TJ;Javidi, B (2006) Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects Three-Dimensional TV, Video, and Display V , pp.91-104 [DOI] [Details]
	2006	Iterative and non-iterative nonuniform quantisation techniques in digital holography Shortt, AE;Naughton, TJ;Javidi, B (2006) Iterative and non-iterative nonuniform quantisation techniques in digital holography PHOTON MANAGEMENT II , pp.447-458 [DOI] [Details]
	2005	Three-dimensional scene reconstruction using digital holograms McElhinney, CP;Maycock, J;McDonald, JB;Naughton, TJ;Javidi, B (2005) Three-dimensional scene reconstruction using digital holograms Opto-Ireland 2005: Imaging and Vision , pp.48-57 [DOI] [Details]
	2005	Compression of encrypted three-dimensional objects using digital holography Naughton, TJ;Javidi, B (2005) Compression of encrypted three-dimensional objects using digital holography Opto-Ireland 2005: Photonic Engineering , pp.399-409 [DOI] [full-text] [Details]
	2005	Extraction of three-dimensional shape information from a digital hologram Mc Elhinney, CP and Maycock, J and Naughton, TJ and McDonald, JB and Javidi, B (2005) Extraction of three-dimensional shape information from a digital hologram Optics \& Photonics 2005 , pp.590805-590805 [Details]
	2005	A high-throughput bioinformatics distributed computing platform Keane, TM;Page, AJ;McInerney, JO;Naughton, TJ (2005) A high-throughput bioinformatics distributed computing platform 18th IEEE Symposium on Computer-Based Medical Systems, Proceedings , pp.377-382 [full-text] [Details]
	2005	Vector quantisation compression of digital holograms of three-dimensional objects Shortt, AE;Naughton, TJ;Javidi, B (2005) Vector quantisation compression of digital holograms of three-dimensional objects Opto-Ireland 2005: Photonic Engineering , pp.265-273 [DOI] [Details]
	2005	Optimal quantisation applied to digital holographic data Shortt, AE;Naughton, TJ;Javidi, B (2005) Optimal quantisation applied to digital holographic data Opto-Ireland 2005: Photonic Engineering , pp.58-68 [DOI] [Details]
	2004	Adaptive scheduling across a distributed computation platform Page, A;Keane, T;Naughton, TJ (2004) Adaptive scheduling across a distributed computation platform ISPDC 2004: THIRD INTERNATIONAL SYMPOSIUM ON PARALLEL AND DISTRIBUTED COMPUTING/HETEROPAR '04: THIRD INTERNATIONAL WORKSHOP ON ALGORITHMS, MODELS AND TOOLS FOR PARALLEL COMPUTING ON HETEROGENEOUS NETWORKS, PROCEEDINGS , pp.141-148 [full-text] [Details]
	2004	Nonuniform quantization compression techniques for digital holograms of three-dimensional objects Shortt, AE;Naughton, TJ;Javidi, B (2004) Nonuniform quantization compression techniques for digital holograms of three-dimensional objects OPTICAL INFORMATION SYSTEMS II , pp.30-41 [DOI] [Details]
	2004	Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects Mc Elhinney, CP;Shortt, AE;Naughton, TJ;Javidi, B (2004) Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects OPTICAL INFORMATION SYSTEMS II , pp.62-69 [DOI] [Details]
	2003	Combined nonuniform quantization and lossless coding of digital holograms of three-dimensional objects Shortt, AE;Naughton, TJ;Javidi, B (2003) Combined nonuniform quantization and lossless coding of digital holograms of three-dimensional objects THREE-DIMENSIONAL TV, VIDEO, AND DISPLAY II , pp.81-88 [Details]
	2003	Nonuniform quantization compression of digital holograms of three-dimensional objects using artificial neural networks Shortt, AE;Naughton, TJ;Javidi, B (2003) Nonuniform quantization compression of digital holograms of three-dimensional objects using artificial neural networks OPTICAL INFORMATION SYSTEMS , pp.185-191 [Details]
	2003	Three-dimensional imaging, compression, and reconstruction of digital holograms Naughton, TJ;Frauel, Y;Matoba, O;Bertaux, N;Tajahuerce, E;Javidi, B (2003) Three-dimensional imaging, compression, and reconstruction of digital holograms OPTP-IRELAND 2002: OPTICAL METROLOGY, IMAGING, AND MACHINE VISION , pp.104-114 [Details]
	2002	Efficient compression of digital holograms for Internet transmission of three-dimensional images Naughton, TJ;Mc Donald, JB;Frauel, Y;Javidi, B (2002) Efficient compression of digital holograms for Internet transmission of three-dimensional images 2002 IEEE/LEOS ANNUAL MEETING CONFERENCE PROCEEDINGS, VOLS 1 AND 2 , pp.33-34 [full-text] [Details]
	2002	Distributed Java platform with programmable MIMD capabilities Keane, T;Allen, R;Naughton, TJ;McInerney, J;Waldron, J (2002) Distributed Java platform with programmable MIMD capabilities SCIENTIFIC ENGINEERING FOR DISTRIBUTED JAVA APPLICATIONS , pp.122-131 [full-text] [Details]
	2000	A model of computation for Fourier optical processors Naughton, TJ (2000) A model of computation for Fourier optical processors OPTICS IN COMPUTING 2000 , pp.24-34 [full-text] [Details]
	2000	Fourier optical limits of coherent acousto-optic matrix-vector processor Naughton, TJ (2000) Fourier optical limits of coherent acousto-optic matrix-vector processor OPTICS IN COMPUTING 2000 , pp.181-190 [full-text] [Details]
	2000	Continuous-space model of computation is Turing universal Naughton, TJ (2000) Continuous-space model of computation is Turing universal CRITICAL TECHNOLOGIES FOR THE FUTURE OF COMPUTING , pp.121-128 [full-text] [Details]
	2010	Displaying digital holograms of real-world objects on a mobile device using tilt-based interaction LehtimÃ¤ki T.;SÃ¤Ã¤skilahti K.;Kowiel M.;Naughton T. (2010) Displaying digital holograms of real-world objects on a mobile device using tilt-based interaction 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Evaluation of perceived quality attributes of digital holograms viewed with a stereoscopic display LehtimÃ¤ki T.;SÃ¤Ã¤skilahti K.;PitkÃ¤aho T.;Naughton T. (2010) Evaluation of perceived quality attributes of digital holograms viewed with a stereoscopic display 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Phase in optical image processing Naughton T. (2010) Phase in optical image processing AIP Conference Proceedings , pp.235-241 [full-text] [Details]
	2010	Capture, processing, and display of real-world 3D objects using digital holography Naughton T.;Falldorf C.;Onural L.;Ferraro P.;Depeursinge C.;Krueger S.;Emery Y.;Hennelly B.;Kujawifiska M. (2010) Capture, processing, and display of real-world 3D objects using digital holography 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Using disparity in digital holograms for three-dimensional object segmentation PitkÃ¤aho T.;Naughton T. (2010) Using disparity in digital holograms for three-dimensional object segmentation Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2010	Visually lossless compression of digital hologram sequences Darakis E.;Kowiel M.;NÌˆasÌˆanen R.;Naughton T. (2010) Visually lossless compression of digital hologram sequences SPIE Electronic Imaging 2010: Image Quality and System Performance VII (Proc. SPIE vol. 7529) San Jose, USA, [DOI] [full-text] [Details]
	2010	Digital Fresnel hologram watermarking Nishchal N.;PitkÃ¤aho T.;Naughton T. (2010) Digital Fresnel hologram watermarking 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Numerical reconstruction of digital holograms for conventional 3D display PitkÃ¤aho T.;Naughton T. (2010) Numerical reconstruction of digital holograms for conventional 3D display 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Comparing numerical error and visual quality in reconstructions from compressed digital holograms LehtimÃ¤ki T.;SÃ¤Ã¤skilahti K.;PitkÃ¤aho T.;Naughton T. (2010) Comparing numerical error and visual quality in reconstructions from compressed digital holograms Three-Dimensional Imaging, Visualization, and Display 2010 (Proc. SPIE vol. 7690) Orlando, USA, [DOI] [full-text] [Details]
	2010	3D perception of numerical hologram reconstructions enhanced by motion and stereo NÃ¤sÃ¤nen R.;Colomb T.;Emery Y.;Naughton T. (2010) 3D perception of numerical hologram reconstructions enhanced by motion and stereo 2010 9th Euro-American Workshop on Information Optics, WIO 2010 [DOI] [full-text] [Details]
	2010	Stereo perception of reconstructions of digital holograms of real-world objects LehtimÃ¤ki T.;SÃ¤Ã¤skilahti K.;NÃ¤sÃ¤nen R.;Naughton T. (2010) Stereo perception of reconstructions of digital holograms of real-world objects Journal of Physics: Conference Series [DOI] [full-text] [Details]
	2009	Compression of digital hologram sequences using MPEG-4 Darakis E.;Naughton T. (2009) Compression of digital hologram sequences using MPEG-4 Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2009	Segmentation and visualization of digital in-line holographic microscopy of three-dimensional scenes using reconstructed intensity images Molony K.;Ryle J.;Mcdonnell S.;Sheridan J.;Naughton T. (2009) Segmentation and visualization of digital in-line holographic microscopy of three-dimensional scenes using reconstructed intensity images Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2009	Quantization noise: An additional constraint for the extended sampling theorem Kelly D.;Pandey N.;Hennelly B.;Naughton T. (2009) Quantization noise: An additional constraint for the extended sampling theorem Optics InfoBase Conference Papers [full-text] [Details]
	2009	Localization of microfibers within volumes using digital holographic video Darakis E.;Kempkesc M.;Khanam T.;Rajendran A.;Kariwala V.;Naughton T.;Mazzotti M.;Asundi A. (2009) Localization of microfibers within volumes using digital holographic video Optics InfoBase Conference Papers [full-text] [Details]
	2009	Stereo vision based approach for extracting features from digital holograms Pitkäaho, T. and T.J. Naughton (2009) Stereo vision based approach for extracting features from digital holograms FRINGE 2009: The 6th International Workshop on Advanced Optical Metrology , pp.562-567 [full-text] [Details]
	2009	Processing of optically-captured digital holograms for three-dimensional display (Invited) Naughton, T.J., T. Kreis, L. Onural, P. Ferraro, C. Depeursinge, Y. Emery, B.M. Hennelly, M. Kujawinska (2009) Processing of optically-captured digital holograms for three-dimensional display (Invited) Three-Dimensional Imaging, Visualization, and Display 2009, Proceedings of SPIE vol. 7329 [full-text] [Details]
	2009	Multispectral lensless digital holographic microscope: imaging MCF-7 and MDA-MB-231 cancer cell cultures Ryle, J.P., K.M. Molony, S. McDonnell, T.J. Naughton, and J.T. Sheridan (2009) Multispectral lensless digital holographic microscope: imaging MCF-7 and MDA-MB-231 cancer cell cultures Optics and Photonics for Information Processing III, Proceedings of SPIE vol. 7442 [full-text] [Details]
	2009	Stereo vision based approach for extracting features from digital holograms PitkÃ¤aho T.;Naughton T. (2009) Stereo vision based approach for extracting features from digital holograms Fringe 2009 - 6th International Workshop on Advanced Optical Metrology , pp.562-567 [DOI] [full-text] [Details]
	2009	Speed up of Fresnel transforms for digital holography using pre-computed chirp and GPU processing Pandey N.;Kelly D.;Naughton T.;Hennelly B. (2009) Speed up of Fresnel transforms for digital holography using pre-computed chirp and GPU processing Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2009	Processing of optically-captured digital holograms for three-dimensional display Naughton T.;Kreis T.;Onural L.;Ferraro P.;Depeursinge C.;Emery Y.;Hennelly B.;KujawiÃ±ska M. (2009) Processing of optically-captured digital holograms for three-dimensional display Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2009	Multispectral lensless digital holographic microscope: Imaging MCF-7 and MDA-MB-231 cancer cell cultures Ryle J.;Molony K.;McDonnell S.;Naughton T.;Sheridan J. (2009) Multispectral lensless digital holographic microscope: Imaging MCF-7 and MDA-MB-231 cancer cell cultures Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2009	Resolution limits in practical digital holographic systems Kelly D.;Hennelly B.;Pandey N.;Naughton T.;Rhodes W. (2009) Resolution limits in practical digital holographic systems Optical Engineering [DOI] [full-text] [Details]
	2009	Three-dimensional image watermarking using fractional Fourier transform Nishchal, N.K. and T.J. Naughton (2009) Three-dimensional image watermarking using fractional Fourier transform ICOP 2009 - International Conference on Optics and Photonics [full-text] [Details]
	2009	Visual perception of digital holograms on autostereoscopic displays LehtimÌˆaki T.;Saaskilahti K.;Nasanen R.;Naughton T. (2009) Visual perception of digital holograms on autostereoscopic displays Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	Image processing of real-world three-dimensional objects sensed with digital holography McElhinney C.;Hennelly B.;Naughton T. (2008) Image processing of real-world three-dimensional objects sensed with digital holography Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2008	A comparison of wavelet analysis techniques in digital holograms Molony K.;Maycock J.;Mc Donald J.;Hennelly B.;Naughton T. (2008) A comparison of wavelet analysis techniques in digital holograms Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	A practical guide to digital holography and generalized sampling Kelly D.;Hennelly B.;McElhinney C.;Naughton T. (2008) A practical guide to digital holography and generalized sampling Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	Cost function statistical analysis in double random phase encoding Monaghan D.;Gopinathan U.;Situ G.;Naughton T.;Sheridan J. (2008) Cost function statistical analysis in double random phase encoding Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	On-line Digital Holographic Measurement of Size and Shape of Microparticles for Crystallization Processes Khanam, T., A.K. Asundi, E. Darakis, V. Kariwala, T.J. Naughton and A. Rajendranand (2008) On-line Digital Holographic Measurement of Size and Shape of Microparticles for Crystallization Processes Proceedings of the Ninth International Symposium on Laser Metrology vol. 7155 [Details]
	2008	Segmentation of three-dimensional scenes encoded in digital holograms Molony K.;McElhinney C.;Hennelly B.;Naughton T. (2008) Segmentation of three-dimensional scenes encoded in digital holograms Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2008	Removing the Twin Image in Digital Holography by Segmented Filtering of In-focus Twin Image McElhinney, C.P., L. Ahrenberg, B.M. Hennelly and T.J. Naughton (2008) Removing the Twin Image in Digital Holography by Segmented Filtering of In-focus Twin Image Optics and Photonics for Information Processing II vol. 7072, Proceedings of SPIE [full-text] [Details]
	2008	Three-dimensional Optical Image Encryption using Fractional Fourier Transform Nishchal, N.K. and T.J. Naughton (2008) Three-dimensional Optical Image Encryption using Fractional Fourier Transform Proceedings of PHOTONICS 2008—International Conference on Fiber Optics and Photonics [Details]
	2008	Focused image creation approaches for macroscopic objects encoded in digital holograms Mc Elhinney C.;Hennelly B.;Naughton T. (2008) Focused image creation approaches for macroscopic objects encoded in digital holograms Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	Optical computing Woods D. and T. J. Naughton (2008) Optical computing Proceedings of the International Workshop on Physics and Computation, CDMTCS Research Report Series vol. 327 , pp.307-330 [full-text] [Details]
	2008	Twin-image Reduction in Inline Digital Holography using an Object Segmentation Heuristic McElhinney, C.P., B.M. Hennelly and T.J. Naughton (2008) Twin-image Reduction in Inline Digital Holography using an Object Segmentation Heuristic Euro American Workshop in Information Optics [full-text] [Details]
	2008	Cost Function Statistical Analysis in Double Random Phase Encoding Monaghan, D.S., U. Gopinathan, T. J. Naughton, J. T. Sheridan and G. Situ (2008) Cost Function Statistical Analysis in Double Random Phase Encoding Optics and Photonics for Information Processing II vol. 7072, Proceedings of SPIE [full-text] [Details]
	2008	Segmentation of Macroscopic Object Digital Holographic Reconstructions using Extracted Depth Information McElhinney, C.P., B.M. Hennelly, J. McDonald and T.J. Naughton (2008) Segmentation of Macroscopic Object Digital Holographic Reconstructions using Extracted Depth Information Optical and Digital Image Processing, Proceedings of SPIE vol. 7000 [Details]
	2008	Removing the twin image in digital holography by segmented filtering of in-focus twin image McElhinney C.;Hennelly B.;Ahrenberg L.;Naughton T. (2008) Removing the twin image in digital holography by segmented filtering of in-focus twin image Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2008	Focused image creation algorithms for digital holograms of macroscopic three-dimensional objects McElhinney C.;Hennelly B.;Naughton T. (2008) Focused image creation algorithms for digital holograms of macroscopic three-dimensional objects Optics InfoBase Conference Papers [Details]
	2008	Parallel and sequential optical computing Woods D.;Naughton T. (2008) Parallel and sequential optical computing Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) , pp.70-86 [DOI] [full-text] [Details]
	2008	Focused Image Creation Algorithms for Digital Holograms of Macroscopic Three-dimensional Objects McElhinney, C.P., B.M. Hennelly and T.J. Naughton (2008) Focused Image Creation Algorithms for Digital Holograms of Macroscopic Three-dimensional Objects OSA Digital Holography and Three-Dimensional Imaging [Details]
	2008	On-line Digital Holographic Measurement of Size and Shape of Microparticles for Crystallization Processes Khanam, T., A.K. Asundi, E. Darakis, V. Kariwala, T.J. Naughton and A. Rajendranand (2008) On-line Digital Holographic Measurement of Size and Shape of Microparticles for Crystallization Processes Photon Management III, Proceedings of SPIE vol. 6994 [Details]
	2008	On-line digital holographic measurement of size and shape of microparticles for crystallization processes Khanam T.;Darakis E.;Rajendran A.;Kariwala V.;Asundi A.;Naughton T. (2008) On-line digital holographic measurement of size and shape of microparticles for crystallization processes Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2008	Processing of digital holograms for size measurements of microparticles Darakis E.;Khanam T.;Rajendran A.;Kariwala V.;Asundi A.;Naughton T. (2008) Processing of digital holograms for size measurements of microparticles Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2008	A Practical Guide to Digital Holography and Generalized Sampling Kelly, D.P., B.M. Hennelly, C. P. McElhinney and T.J. Naughton (2008) A Practical Guide to Digital Holography and Generalized Sampling Optics and Photonics for Information Processing II vol. 7072, Proceedings of SPIE [full-text] [Details]
	2008	Segmentation of Three-dimensional Scenes encoded in Digital Holograms Molony, K.M., B.M. Hennelly, C.P. McElhinney and T.J. Naughton (2008) Segmentation of Three-dimensional Scenes encoded in Digital Holograms Optics and Photonics for Information Processing II vol. 7072, Proceedings of SPIE [Details]
	2007	Digital holographic superresolution by rotating the object wavefield Hennelly B.;Naughton T.;McDonald J. (2007) Digital holographic superresolution by rotating the object wavefield Optics InfoBase Conference Papers [full-text] [Details]
	2007	Stereoscopic viewing of digital holograms of real-world objects LehtimÃ¤ki T.;Naughton T. (2007) Stereoscopic viewing of digital holograms of real-world objects Proceedings of 3DTV-CON [DOI] [full-text] [Details]
	2007	Imaging through a biological medium using speckle noise removal techniques Cuddihy A.;Hennelly B.;Naughton T.;Markham C.;O'Neill R. (2007) Imaging through a biological medium using speckle noise removal techniques Progress in Biomedical Optics and Imaging - Proceedings of SPIE [Details]
	2007	Imaging through a biological medium using speckle noise removal techniques Cuddihy A.;Hennelly B.;Naughton T.;Markham C.;O'Neill R. (2007) Imaging through a biological medium using speckle noise removal techniques Optics InfoBase Conference Papers [Details]
	2007	Segmentation of three-dimensional objects from background in digital holograms Mc Elhinney C.;McDonald J.;Castro A.;Frauel Y.;Javidi B.;Naughton T. (2007) Segmentation of three-dimensional objects from background in digital holograms International Machine Vision and Image Processing Conference, IMVIP 2007 , pp.41-46 [DOI] [full-text] [Details]
	2007	Spread space spread spectrum technique for secure multiplexing Hennelly B.;McDonald J.;Sheridan J.;Gopinathan U.;Kelly D.;Javidi B.;Naughton T. (2007) Spread space spread spectrum technique for secure multiplexing AIP Conference Proceedings , pp.138-144 [DOI] [Details]
	2007	Speckle reduction from digital holograms by simulating temporal incoherence Hennelly B.;Kelly D.;Maycock J.;Naughton T.;McDonald J. (2007) Speckle reduction from digital holograms by simulating temporal incoherence Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2007	Analysis of double random phase encryption from a key-space perspective Monaghan D.;Situ G.;Ryle J.;Gopinathan U.;Naughton T.;Sheridan J. (2007) Analysis of double random phase encryption from a key-space perspective Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Bio-computation using Holliday junctions N. Murphy, D. Woods, and T.J. Naughton (2006) Bio-computation using Holliday junctions 4TH INT CONF ON INFORMATION AND 4TH IRISH CONF ON THE MATHEMATICAL FOUNDATIONS OF COMPUTER SCIENCE AND IT , pp.317-320 [full-text] [Details]
	2006	Speckle reduction in digital holography using Independent Component Analysis Maycock J.;McElhinney C.;McDonald J.;Naughton T.;Hennelly B.;Javidi B. (2006) Speckle reduction in digital holography using Independent Component Analysis Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Analysis of partially occluded objects encoded in digital holograms using the Wigner distribution function Hennelly B.;Maycock J.;Mc Elhinney C.;Naughton T.;McDonald J.;Javidi B. (2006) Analysis of partially occluded objects encoded in digital holograms using the Wigner distribution function Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Capture, encryption, compression, and display of digital holograms of three-dimensional objects Gopinathan U.;Monaghan D.;Shortt A.;Naughton T.;Sheridan J.;Javidi B. (2006) Capture, encryption, compression, and display of digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2006	A method for superresolution in digital holography Hennelly B.;Naughton T.;McDonald J.;Frauel Y.;Javidi B. (2006) A method for superresolution in digital holography Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	A numerical analysis of double random phase encryption Monaghan D.;Gopinathan U.;Naughton T.;Sheridan J. (2006) A numerical analysis of double random phase encryption Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2006	Measurement of compression defects in phase-shifting digital holographic data Darakis E.;Naughton T.;Soraghan J.;Javidi B. (2006) Measurement of compression defects in phase-shifting digital holographic data Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Superposition of digital holograms Hennelly B.;Mc Elhinney C.;Frauel Y.;Naughton T.;McDonald J.;Javidi B. (2006) Superposition of digital holograms AIP Conference Proceedings , pp.281-289 [Details]
	2006	Reconstruction of partially occluded objects using digital holograms Maycock J.;Mc Elhinney C.;Hennelly B.;Naughton T.;McDonald J.;Javidi B. (2006) Reconstruction of partially occluded objects using digital holograms Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects Shortt A.;Naughton T.;Javidi B. (2006) Combined optimal quantization and lossless coding of digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Cryptanalysis of optical encryption: a heuristic approach U. Gopinathan, D.S. Monaghan, T.J. Naughton, and J.T. Sheridan (2006) Cryptanalysis of optical encryption: a heuristic approach INFORMATION OPTICS: 5TH INTERNATIONAL WORKSHOP , pp.169-177 [Details]
	2006	Iterative and non-iterative nonuniform quantisation techniques in digital holography Shortt A.;Naughton T.;Javidi B. (2006) Iterative and non-iterative nonuniform quantisation techniques in digital holography Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Cryptanalysis of optical encryption: A heuristic approach Gopinathan U.;Monaghan D.;Naughton T.;Sheridan J. (2006) Cryptanalysis of optical encryption: A heuristic approach AIP Conference Proceedings , pp.169-177 [Details]
	2006	Digital in-line holography of biological specimens Ryle J.;Gopinathan U.;McDonnell S.;Naughton T.;Sheridan J. (2006) Digital in-line holography of biological specimens Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2006	Distributed Monte Carlo simulation of light transportation in tissue Page A.;Coyle S.;Keane T.;Naughton T.;Markham C.;Ward T. (2006) Distributed Monte Carlo simulation of light transportation in tissue 20th International Parallel and Distributed Processing Symposium, IPDPS 2006 [DOI] [full-text] [Details]
	2006	Numerical analysis of systematic errors in an optical encryption system Monaghan D.;Gopinathan U.;Kelly D.;Naughton T.;Sheridan J. (2006) Numerical analysis of systematic errors in an optical encryption system Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2006	Wigner distribution function and digital holography Hennelly B.;Naughton T.;McDonald J. (2006) Wigner distribution function and digital holography Proceedings of SPIE - The International Society for Optical Engineering [DOI] [Details]
	2005	Bioinformatics on a Heterogeneous Java Distributed System Page, A.J., Keane, T.M. and Naughton, T.J. (2005) Bioinformatics on a Heterogeneous Java Distributed System Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 5 - Volume 06 [full-text] [Details]
	2005	Three-dimensional scene reconstruction using digital holograms McElhinney C.;Maycock J.;McDonald J.;Naughton T.;Javidi B. (2005) Three-dimensional scene reconstruction using digital holograms Proceedings of SPIE - The International Society for Optical Engineering , pp.48-57 [DOI] [Details]
	2005	Nonuniform quantization for compression of encrypted digital holograms Shortt A.;Naughton T.;Javidi B. (2005) Nonuniform quantization for compression of encrypted digital holograms Proceedings of SPIE - The International Society for Optical Engineering , pp.1-11 [DOI] [Details]
	2005	Applications of spatial light modulators in optical signal processing systems Monaghan D.;Gopinathan U.;Hennelly B.;Kelly D.;Naughton T.;Sheridan J. (2005) Applications of spatial light modulators in optical signal processing systems Proceedings of SPIE - The International Society for Optical Engineering , pp.358-368 [DOI] [full-text] [Details]
	2005	Bioinformatics on a heterogeneous Java distributed system Page A.;Keane T.;Naughton T. (2005) Bioinformatics on a heterogeneous Java distributed system Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005 [DOI] [full-text] [Details]
	2005	Three-dimensional image encryption, transmission and processing by using digital holography Javidi B.;Tajahuerce E.;Naughton T.;Frauel Y.;Matoba O. (2005) Three-dimensional image encryption, transmission and processing by using digital holography Proceedings of SPIE - The International Society for Optical Engineering , pp.1-14 [DOI] [Details]
	2005	A high-throughput bioinformatics distributed computing platform Keane T.;Page A.;McInerney J.;Naughton T. (2005) A high-throughput bioinformatics distributed computing platform Proceedings - IEEE Symposium on Computer-Based Medical Systems , pp.377-382 [full-text] [Details]
	2005	Independent component analysis applied to digital holograms of three-dimensional objects Maycock J.;McElhinney C.;McDonald J.;Naughton T.;Javidi B. (2005) Independent component analysis applied to digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering , pp.1-9 [DOI] [Details]
	2005	Strengths and weaknesses of optical encryption algorithms Gopinathan U.;Monaghan D.;Naughton T.;Sheridan J.;Javidi B. (2005) Strengths and weaknesses of optical encryption algorithms Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS , pp.951-952 [DOI] [full-text] [Details]
	2005	Holographic image processing of three-dimensional objects Maycock J.;Mc Elhinney C.;Shortt A.;Naughton T.;McDonald J.;Hennelly B.;Gopinathan U.;Monaghan D.;Sheridan J.;Javidi B. (2005) Holographic image processing of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2005	Extraction of three-dimensional shape information from a digital hologram Mc Elhinney C.;Maycock J.;Naughton T.;McDonald J.;Javidi B. (2005) Extraction of three-dimensional shape information from a digital hologram Proceedings of SPIE - The International Society for Optical Engineering , pp.1-12 [DOI] [Details]
	2005	Dynamic task scheduling using genetic algorithms for heterogeneous distributed computing Page A.;Naughton T. (2005) Dynamic task scheduling using genetic algorithms for heterogeneous distributed computing Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005 [DOI] [full-text] [Details]
	2005	Compression of encrypted three-dimensional objects using digital holography Naughton T.;Javidi B. (2005) Compression of encrypted three-dimensional objects using digital holography Proceedings of SPIE - The International Society for Optical Engineering , pp.399-409 [DOI] [Details]
	2005	Digital optics, digital holography and optical encryption Monaghan D.;Gopinathan U.;Hennelly B.;Naughton T.;Sheridan J. (2005) Digital optics, digital holography and optical encryption Proceedings of SPIE - The International Society for Optical Engineering , pp.1-15 [DOI] [Details]
	2005	An Optical Encryption Scheme that uses Polarization of Coherent Light Gopinathan U.;Monaghan D.;Naughton T.;Sheridan J. (2005) An Optical Encryption Scheme that uses Polarization of Coherent Light Optics InfoBase Conference Papers [Details]
	2005	New developments in active and passive 3D image sensing, visualization, and processing Javidi B.;Tajahuerce E.;MartÃnez-Corral M.;Naughton T.;Frauel Y. (2005) New developments in active and passive 3D image sensing, visualization, and processing Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2005	A high-throughput bioinformatics distributed computing platform Keane, T.M, Page, A.J., McInerney, J.O. and Naughton, T.J. (2005) A high-throughput bioinformatics distributed computing platform Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems , pp.377-382 [full-text] [Details]
	2005	Compression of digital holograms of three-dimensional objects using the wavelet transform Shortt A.;Naughton T.;Javidi B. (2005) Compression of digital holograms of three-dimensional objects using the wavelet transform Proceedings of SPIE - The International Society for Optical Engineering , pp.1-13 [DOI] [Details]
	2005	Vector quantisation compression of digital holograms of three-dimensional objects Shortt A.;Naughton T.;Javidi B. (2005) Vector quantisation compression of digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering , pp.265-273 [DOI] [Details]
	2005	Security analysis of optical encryption Frauel Y.;Castro A.;Naughton T.;Javidi B. (2005) Security analysis of optical encryption Proceedings of SPIE - The International Society for Optical Engineering [DOI] [full-text] [Details]
	2005	Optimal quantisation applied to digital holographic data Shortt A.;Naughton T.;Javidi B. (2005) Optimal quantisation applied to digital holographic data Proceedings of SPIE - The International Society for Optical Engineering , pp.58-68 [DOI] [Details]
	2005	Framework for task scheduling in heterogeneous distributed computing using genetic algorithms Page, AJ;Naughton, T (2005) Framework for task scheduling in heterogeneous distributed computing using genetic algorithms ARTIFICIAL INTELLIGENCE REVIEW , pp.415-429 [DOI] [full-text] [Details]
	2004	Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects McElhinney C.;Shortt A.;Naughton T.;Javidi B. (2004) Blockwise discrete Fourier transform analysis of digital hologram data of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering , pp.62-69 [DOI] [Details]
	2004	Quantisation compression of digital holograms of three-dimensional objects using histogram data A.E. Shortt, T.J. Naughton, and B. Javidi (2004) Quantisation compression of digital holograms of three-dimensional objects using histogram data OPTICS IN COMPUTING 2004, EUROPEAN OPTICAL SOCIEY TOPICAL MEETING , pp.25-26 [Details]
	2004	Adaptive scheduling across a distributed computation platform A Page, T. Keane, and T.J. Naughton (2004) Adaptive scheduling across a distributed computation platform 3RD INTERNATIONAL IEEE SYMPOSIUM ON PARALLEL AND DISTRIBUTED COMPUTING , pp.141-149 [full-text] [Details]
	2004	Framework for task scheduling in heterogeneous distributed computing using genetic algorithms A.J. Page, and T.J. Naughton (2004) Framework for task scheduling in heterogeneous distributed computing using genetic algorithms 15TH ARTIFICIAL INTELLIGENCE AND COGNITIVE SCIENCE CONFERENCE , pp.137-146 [full-text] [Details]
	2004	Discrete Fourier transform quantisation tables for digital holograms of three-dimensional objects C.P. Mc Elhinney, A.E. Shortt, T.J. Naughton, and B. Javidi (2004) Discrete Fourier transform quantisation tables for digital holograms of three-dimensional objects 8TH IRISH MACHINE VISION AND IMAGE PROCESSING CONFERENCE , pp.50-57 [Details]
	2004	Three-dimensional image sensing, encryption, compression, and transmission using digital holography Naughton, T.J., Tajahuerce, E., McDonald, J. B. and Javidi, B. (2004) Three-dimensional image sensing, encryption, compression, and transmission using digital holography PROCEEDINGS- SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING [full-text] [Details]
	2004	Adaptive scheduling across a distributed computation platform Page A.;Keane T.;Naughton T. (2004) Adaptive scheduling across a distributed computation platform Proceedings - ISPDC 2004: Third International Symposium on Parallel and Distributed Computing/HeteroPar '04: Third International Workshop on Algorithms, Models and Tools for Parallel Computing on Hete , pp.141-148 [DOI] [full-text] [Details]
	2004	Nonuniform quantization compression techniques for digital holograms of three-dimensional objects Shortt A.;Naughton T.;Javidi B. (2004) Nonuniform quantization compression techniques for digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering , pp.30-41 [DOI] [Details]
	2004	Three-dimensional image sensing, encryption, compression, and transmission using digital holography Naughton T.;Tajahuerce E.;McDonald J.;Javidi B. (2004) Three-dimensional image sensing, encryption, compression, and transmission using digital holography Proceedings of SPIE - The International Society for Optical Engineering , pp.24-32 [DOI] [full-text] [Details]
	2003	Nonuniform quantization compression of digital holograms of three-dimensional objects using artificial neural networks Shortt A.;Naughton T.;Javidi B. (2003) Nonuniform quantization compression of digital holograms of three-dimensional objects using artificial neural networks Proceedings of SPIE - The International Society for Optical Engineering , pp.185-191 [Details]
	2003	Combined nonuniform quantization and lossless coding of digital holograms of three-dimensional objects Shortt A.;Naughton T.;Javidi B. (2003) Combined nonuniform quantization and lossless coding of digital holograms of three-dimensional objects Proceedings of SPIE - The International Society for Optical Engineering , pp.81-88 [Details]
	2002	Efficient compression of digital holograms for internet transmission of three-dimensional images Naughton T.;Mc Donald J.;Frauel Y.;Javidi B. (2002) Efficient compression of digital holograms for internet transmission of three-dimensional images Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS , pp.33-34 [full-text] [Details]
	2002	Three-dimensional imaging, compression, and reconstruction of digital holograms Naughton T.;Frauel Y.;Matoba O.;Bertaux N.;Tajahuerce E.;Javidi B. (2002) Three-dimensional imaging, compression, and reconstruction of digital holograms Proceedings of SPIE - The International Society for Optical Engineering , pp.104-114 [DOI] [Details]
	2002	Three-dimensional object reconstruction using phase-only information from a digital hologram Matoba O.;Naughton T.;Frauel Y.;Bertaux N.;Javidi B. (2002) Three-dimensional object reconstruction using phase-only information from a digital hologram Proceedings of SPIE - The International Society for Optical Engineering , pp.122-128 [DOI] [full-text] [Details]
	2001	On the computational power of a continuous-space optical model of computation Naughton T.;Woods D. (2001) On the computational power of a continuous-space optical model of computation Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) , pp.288-299 [full-text] [Details]
	2000	Fourier optical limits of coherent acousto-optic matrix-vector processor Naughton T. (2000) Fourier optical limits of coherent acousto-optic matrix-vector processor Proceedings of SPIE - The International Society for Optical Engineering , pp.181-190 [full-text] [Details]
	2000	Model of computation for Fourier optical processors Naughton T. (2000) Model of computation for Fourier optical processors Proceedings of SPIE - The International Society for Optical Engineering , pp.24-34 [full-text] [Details]
	2000	Continuous-space model of computation is Turing universal Naughton T. (2000) Continuous-space model of computation is Turing universal Proceedings of SPIE - The International Society for Optical Engineering , pp.121-128 [full-text] [Details]
	1998	Reconfigurable acousto-optical implementation of the Hough transform Javadpour Z.;Naughton T.;Keating J.;Rott J.;Klima M. (1998) Reconfigurable acousto-optical implementation of the Hough transform Conference on Lasers and Electro-Optics Europe - Technical Digest [Details]
	1998	Optical neural network training on a reconfigurable processor Naughton T.;Keating J.;Rott J.;Klima M. (1998) Optical neural network training on a reconfigurable processor Conference on Lasers and Electro-Optics Europe - Technical Digest [Details]

Conference Contributions

	Year	Publication
	2003	Scientific Engineering for Distributed Java Applications. Thomas Keane, Richard Allen, Thomas J. Naughton, James McInerney, and John Waldron (2003) Scientific Engineering for Distributed Java Applications. [Peer Reviewed Published Proceedings], , 01-FEB-03 - 01-FEB-03 [Details]
	2003	British Colloquium for Theoretical Computer Science, no. 19. Aidan Delaney, Thomas J. Naughton, and Damien Woods (2003) British Colloquium for Theoretical Computer Science, no. 19. [Conference Organising Committee Member], Leicester, UK , 07-APR-03 - 09-APR-03 [Details]
	2002	FIDJI'2002 International Workshop on Scientific Engineering of Distributed Java Applications. Thomas Keane, Richard Allen, Thomas J. Naughton, James McInerney, and John Waldron (2002) FIDJI'2002 International Workshop on Scientific Engineering of Distributed Java Applications. [Peer Reviewed Published Proceedings], Luxembourg-Kirchberg, Luxembourg , 01-NOV-02 - 01-NOV-02 [Details]
	2002	Principles and Practice of Programming in Java. Aidan Delaney and Thomas J. Naughton (2002) Principles and Practice of Programming in Java. [Peer Reviewed Published Proceedings], Dublin, Ireland , 01-JUN-02 - 01-JUN-02 [Details]
	2002	Principles and Practice of Programming in Java. Thomas Keane, Richard Allen, Thomas J. Naughton, James McInerney, and John Waldron (2002) Principles and Practice of Programming in Java. [Peer Reviewed Published Proceedings], Dublin, Ireland , 01-JUN-02 - 01-JUN-02 [Details]
	2002	Three-Dimensional TV, Video, and Display. Osamu Matoba, Thomas J. Naughton, Yann Frauel, Nicolas Bertaux, and Bahram Javidi (2002) Three-Dimensional TV, Video, and Display. [Peer Reviewed Published Proceedings], Boston, Massachusetts , 01-JUL-02 - 01-JUL-02 [Details]
	2002	15th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS),. Thomas J. Naughton, John B. Mc Donald, Yann Frauel, and Bahram Javidi (2002) 15th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS),. [Peer Reviewed Published Proceedings], Glasgow, Scotland , 01-NOV-02 - 01-NOV-02 [Details]
	2002	Optical Metrology, Imaging, and Machine Vision. Thomas J. Naughton, Yann Frauel, Osamu Matoba, Nicolas Bertaux, Enrique Tajahuerce, and Bahram Javidi (2002) Optical Metrology, Imaging, and Machine Vision. [Peer Reviewed Published Proceedings], Galway, Ireland , 01-SEP-02 - 01-SEP-02 [Details]
	2002	International Workshop on Optical Display and Information Processing,. Osamu Matoba, Thomas J. Naughton, Enrique Tajahuerce, Tsutomu Shimura, Kazuo Kuroda, and Bahram Javidi (2002) International Workshop on Optical Display and Information Processing,. [Peer Reviewed Published Proceedings], Gyenonju, Korea , 01-MAY-02 - 01-MAY-02 [Details]
	2002	49th Spring Meeting of The Japan Society of Applied Physics and Related So. Osamu Matoba, Thomas J. Naughton, Bahram Javidi, Tsutomu Shimura, and Kazuo Kuroda (2002) 49th Spring Meeting of The Japan Society of Applied Physics and Related So. [Peer Reviewed Published Proceedings], Tokyo, Japan , 01-MAR-02 - 01-MAR-02 [Details]
	2001	Algorithms and Systems for Optical Information Processing. Thomas J. Naughton, Yann Frauel, Bahram Javidi, and Enrique Tajahuerce (2001) Algorithms and Systems for Optical Information Processing. [Peer Reviewed Published Proceedings], San Diego, California , 01-JUL-01 - 01-JUL-01 [Details]
	2001	Third International Conference on Machines, Computations, and Universality. Thomas J. Naughton and Damien Woods (2001) Third International Conference on Machines, Computations, and Universality. [Peer Reviewed Published Proceedings], Chisinau, Moldova , 01-MAY-01 - 01-MAY-01 [Details]
	2000	Critical Technologies for the Future of Computing. Thomas J. Naughton (2000) Critical Technologies for the Future of Computing. [Peer Reviewed Published Proceedings], San Diego, California , 01-AUG-00 - 01-AUG-00 [Details]
	2000	Optics in Computing 2000. Thomas J. Naughton (2000) Optics in Computing 2000. [Peer Reviewed Published Proceedings], Quebec, Canada , 01-JUN-00 - 01-JUN-00 [Details]
	2000	Optics in Computing 2000. Thomas J. Naughton (2000) Optics in Computing 2000. [Peer Reviewed Published Proceedings], Quebec, Canada , 01-JUN-00 - 01-JUN-00 [Details]
	1998	Workshop `98: Electronics and Instrumentation. Milos Klíma, Jirí Rott, Thomas J. Naughton, and John Keating (1998) Workshop `98: Electronics and Instrumentation. [Peer Reviewed Published Proceedings], Czech Technical University in Prague, Czech Republic , 01-FEB-98 - 01-FEB-98 [Details]
	1998	Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. Thomas J. Naughton, Milos Klíma, and Jirí Rott (1998) Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. [Peer Reviewed Published Proceedings], Maynooth, Ireland , 01-SEP-98 - 01-SEP-98 [Details]
	1998	Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. Zohreh Javadpour, Thomas J. Naughton, John Keating, Jirí Rott, and Milos Klíma (1998) Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. [Peer Reviewed Published Proceedings], Maynooth, Ireland , 01-SEP-98 - 01-SEP-98 [Details]
	1998	8th Annual IEEE Radioelektronika Conference. Milos Klíma, Jirí Rott, Thomas J. Naughton, and John Keating (1998) 8th Annual IEEE Radioelektronika Conference. [Peer Reviewed Published Proceedings], Brno, Czech Republic , 01-APR-98 - 01-APR-98 [Details]
	1998	Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. Thomas J. Naughton, Jirí Rott, and Milos Klíma (1998) Optical Engineering Society of Ireland/Irish Machine Vision and Image Processing Joint Conference. [Peer Reviewed Published Proceedings], Maynooth, Ireland , 01-SEP-98 - 01-SEP-98 [Details]
	1998	IEEE/OSA European Conference on Lasers and Electro-Optics. Zohreh Javadpour, Thomas J. Naughton, John G. Keating, Jirí Rott, and Milos Klíma (1998) IEEE/OSA European Conference on Lasers and Electro-Optics. [Peer Reviewed Published Proceedings], Glasgow, Scotland , 01-SEP-98 - 01-SEP-98 [Details]
	1998	IEEE/OSA European Conference on Lasers and Electro-Optics. Thomas J. Naughton, John G. Keating, Jirí Rott, and Milos Klíma (1998) IEEE/OSA European Conference on Lasers and Electro-Optics. [Peer Reviewed Published Proceedings], Glasgow, Scotland , 01-SEP-98 - 01-SEP-98 [Details]
	1997	Institute of Physics Acousto-optic Components and Techniques. Thomas J. Naughton, John Keating, Milos Klíma, Jirí Rott, and Daniel Gleeson (1997) Institute of Physics Acousto-optic Components and Techniques. [Conference Organising Committee Member], London, UK , 01-MAY-97 - 01-MAY-97 [Details]
	1997	1st International Student Conference on Electrical Engineering. Jirí Rott and Thomas J. Naughton (1997) 1st International Student Conference on Electrical Engineering. [Peer Reviewed Published Proceedings], Czech Technical University in Prague, Czech Republic , 01-MAY-97 - 01-MAY-97 [Details]
	1997	Institute of Physics Acousto-optic Components and Techniques. Zohreh Javadpour, Thomas J. Naughton, John Keating, Milos Klíma, and Jirí Rott (1997) Institute of Physics Acousto-optic Components and Techniques. [Conference Organising Committee Member], London, UK , 01-MAY-97 - 01-MAY-97 [Details]
	1997	31st Annual IEEE International Carnahan Conference on Security Technology. Milos Klíma, Jirí Rott, Thomas J. Naughton, and John Keating (1997) 31st Annual IEEE International Carnahan Conference on Security Technology. [Peer Reviewed Published Proceedings], Canberra, Australia , 01-OCT-97 - 01-OCT-97 [Details]

Article

	Year	Publication
	2003	Distributed Java platform with programmable MIMD capabilities. Keane T.;Allen R.;Naughton T.;McInerney J.;Waldron J. (2003) Distributed Java platform with programmable MIMD capabilities. Article [full-text] [Details]

Conference Paper

	Year	Publication
	2009	Visual perception of digital holograms on autostereoscopic displays. Lehtimäki, T.M., K. Sääskilahti, R. Näsänen, and T.J. Naughton (2009) Visual perception of digital holograms on autostereoscopic displays. Conference Paper [full-text] [Details]
	2007	Speckle Reduction Using the Discrete Fourier Filtering Technique. J. Maycock, B.M. Hennelly, J.B. McDonald, Y. Frauel, A. Castro, B. Javidi, and T.J. Naughton (2007) Speckle Reduction Using the Discrete Fourier Filtering Technique. Conference Paper [full-text] [Details]
	2007	Segmentation of Three-Dimensional Objects from Background in Digital Holograms. C. P. Mc Elhinney, J. B. McDonald, A. Castro, Y. Frauel, B. Javidi, and T. J. Naughton (2007) Segmentation of Three-Dimensional Objects from Background in Digital Holograms. Conference Paper [Details]
	2006	Extraction and reconstruction of shape information from a digital hologram of three-dimensional objects. C.P. Mc Elhinney, J. Maycock, B.M. Hennelly, T.J. Naughton, J.B. McDonald, and B. Javidi (2006) Extraction and reconstruction of shape information from a digital hologram of three-dimensional objects. Conference Paper [full-text] [Details]

Magazine Article

	Year	Publication
	2009	Compression of digital hologram sequences using MPEG-4. Darakis, E. and T.J. Naughton (2009) Compression of digital hologram sequences using MPEG-4. Magazine Article [full-text] [Details]
	2009	Localization of microfibers within volumes using digital holographic video. Darakis, E., M. Kempkes, T. Khanam, A. Rajendran, V. Kariwala, T.J. Naughton, M. Mazzotti, and A. K. Asundi (2009) Localization of microfibers within volumes using digital holographic video. Magazine Article [full-text] [Details]

Technical Publication

	Year	Publication
	2006	Extraction of shape information from three-dimensional objects encoded in a digital hologram. C.P. Mc Elhinney, J. Maycock, B.M. Hennelly, T.J. Naughton, J.B. McDonald, and B. Javidi (2006) Extraction of shape information from three-dimensional objects encoded in a digital hologram. Technical Publication [Details]
	2006	Distributed Monte Carlo simulation of light transportation in tissue. A.J. Page, S. Coyle, T.M. Keane, T.J. Naughton, C. Markham, and T. Ward (2006) Distributed Monte Carlo simulation of light transportation in tissue. Technical Publication [full-text] [Details]
	2006	Analog optical computing. T.J. Naughton (2006) Analog optical computing. Technical Publication [Details]
	2006	Superposition of digital holograms. B.M. Hennelly, C. Mc Elhinney, Y. Frauel, T.J. Naughton, J.B. McDonald, and B. Javidi (2006) Superposition of digital holograms. Technical Publication [Details]

Working Paper

	Year	Publication
	2009	Segmentation and three-dimensional visualisation of digital in-line holographic microscopy data. Molony, K.M., and T.J. Naughton (2009) Segmentation and three-dimensional visualisation of digital in-line holographic microscopy data. Working Paper [Details]
	2009	Real 3D - Digital holography for 3D and 4D real-world objects' capture, processing, and display: Summary of progress from Year 1 (Invited). Naughton, T.J., T. Kreis, L. Onural, P. Ferraro, C. Depeursinge, Y. Emery, B.M. Hennelly, M. Kujawiñska (2009) Real 3D - Digital holography for 3D and 4D real-world objects' capture, processing, and display: Summary of progress from Year 1 (Invited). Working Paper [Details]
	2009	Stereo perception of reconstructions of digital holograms of real-world objects (Invited). Lehtimäki, T.M., K. Sääskilahti, R. Näsänen, and T.J. Naughton (2009) Stereo perception of reconstructions of digital holograms of real-world objects (Invited). Working Paper [Details]
	2009	Segmentation and visualization of digital in-line holographic microscopy of three-dimensional scenes using reconstructed intensity images. Molony, K.M., J.P. Ryle, S. McDonnell, J.T. Sheridan, and T.J. Naughton (2009) Segmentation and visualization of digital in-line holographic microscopy of three-dimensional scenes using reconstructed intensity images. Working Paper [Details]
	2003	Multi-tiered distributed computing platform. Page, A., Keane, T., Allen, R., Naughton, T.J. and Waldron, J. (2003) Multi-tiered distributed computing platform. Working Paper [full-text] [Details]

Professional Associations

	Association	Function	From / To
	OSA - The Optical Society	Journal reviewer, conference session chair	/
	SPIE - International Society for Optical Engineering	Journal reviewer, conference programme commitee, conference session chair	/

Committees

Committee	Function	From / To
Optical Information Systems III, 50th Annual Meeting of SPIE - The International Society for Optical Engineering, San Diego, USA	Programme committee member	2005 / 2005
Three-Dimensional TV, Video, and Display V, SPIE Optics East, Boston, USA	Programme committee member	2006 / 2006
International Machine Vision and Image Processing Conference (IMVIP 2007), Maynooth, Ireland	Programme committee member	2007 / 2007
Optics and Photonics for Information Processing, SPIE Optics & Photonics, San Diego, USA	Programme committee member	2007 / 2007
Optical Information Systems IV, 51st Annual Meeting of SPIE - The International Society for Optical Engineering, San Diego, USA	Programme committee member	2006 / 2006
Electro-Optical Sensors and Systems, 19th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS 2006), Montreal, Canada	Programme committee member	2006 / 2006
ACM Special Interest Group on Algorithms and Computation Theory	Member	/
Electro-Optical Sensors and Systems, 20th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS 2007), Lake Buena Vista, Florida	Programme committee member	2007 / 2007
Photon Management II, SPIE International Symposium on Photonics Europe, Strasbourg, France,	Programme committee member	2006 / 2006
Sixth Euro American Workshop on Information Optics, Reykjavik, Iceland	Programme committee member	2007 / 2007
Optical Information Systems II, 49th Annual Meeting of SPIE - The International Society for Optical Engineering, Denver, USA	Programme committee member	2004 / 2004
NUIM Computer Vision and Imaging Lab	Member	/
Electro-Optical Sensors and Systems, 17th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS 2004), Rio Mar, Puerto Rico	Programme committee member	2004 / 2004
Three Dimensional TV, Video, and Display VI, SPIE Optics East, Boston, USA	Programme committee member	2007 / 2007
NUIM Theoretical Aspects of Software Systems Research Group	Member	/
Electro-Optical Sensors and Systems, 18th Annual Meeting of the IEEE Lasers and Electro-Optics Society (IEEE LEOS 2005), Sydney, Australia	Programme committee member	2005 / 2005
Photon Management in Ireland, SPIE Opto-Ireland Symposium 2005, Dublin, Ireland	Programme committee member	2005 / 2005

Education

	Year	Institution	Qualification	Subject
	1995	NUI Maynooth	B.Sc. (Hons)	Computer Science and Experimental Physics

Reviews

	Journal	Role
	Etri Journal	Referee
	Journal Of Optics A: Pure And Applied Optics	Referee
	Optics Communications	Referee
	Optics Express	Referee
	Measurement Science And Technology	Referee
	Optics Letters	Referee
	Applied Optics	Referee
	Ieee/Osa Journal Of Display Technology	Referee
	Optical Engineering	Referee

Research

Undergraduate Studies

Postgraduate Studies

International

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Maynooth University Faculty of Science & Engineering